RNA id: TU148448


Basic Information

Item Value
RNA id TU148448
length 2415
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G118466
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20033210 ~ 20035657 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttacagcaatgTACACCAAGTCTTGAGATTTATGGAAGAATTTGACCTTATATGCAGAATAtccaagttattttttttccatccctCTTTTAATACAGCTCCAGACATCCAAGCACACACTACAATCATTCTGCAGGGCAAGCAAAACTCAtaacactgaaaagaaaagcacaaccTTTGTCAATAAAAGAACACCACACCACAGACTCAGCAGGAACACACtgctgcaaaacaacaaaaccaaaagtcAACTTTGCTGTGCGTAGTGGCGGCTCAATTTACTTAGTATTAGTTCTTCTGTAAatagaaaaagtgaaaataaaatagctttctttaaataaacattgctgTTCCCTTACCACAGAAAAATCCCAAACAGACTTTCCCAATTCTGTAAAATCACACTCCCCTTTCATAGTTAAATCTACAGTTATGAATCAATCACTAACGCAAATGTGTCTACAAGGACAAAACTGAAGTCTACAGCTTTGCCTGGTTATGATGTGaccatttgcaaatgtatttttttaatgtggagaaaaaaattaCCGTGATAATGTAGGGCAGTGATATCCAGGTTACTGAAAATTAAGGCATTATTCAAACCCTGCCACTGAATTCTCACATCATTTTGATCTCTGAAGTGCATGATCTACAAAAAAATAGTTGCACCCTATCGCAGTTTGGTAAAAATTATGCACAATTCTCTGTATACATGACCTTTTGTTTCGTTATACGATGAATGGGCAGTCCATTATATATGGCTTTGTCACATTGTTGgcataaatatgtacaaaacaGAACACTAAATCAACAGGCCCTTGTAACCCCGAGAGTTTTGCTCTTAACACTGTCCTCAGAGGTTTAGCAGCTTTCATGTGCAGCAGATGtccacaataaatacaaaactatacTCGGGCTAATAACAAAGACCATCCCTTAGAACTGACAGCATTATTATATCAGACTTTTAGCAAAGTTATTTCCTCTGTATAAAAATAAGCATATGCATATTCTTATTGATCGACCAACCAAAATTAAAACGTGTAGCTGTgaaagtgttaattaaaaaaacaaccaacatcaacaacaatatATAACCAAGGAAAACAGATCCTGAATAGTGAATTCAAGTCTCTACATGAGAAATCACAAGCTGTGGTTCTTTCATTCCTCTATTCCCCCACAAGAGCATTCTAGAACCCATACTGCTTGCAGAACAATTTTATGATTCAATCACGTTTTAAAGACCAGATATTCAAAATCAGACGAGTCATTCCACACATCACATCCCAACAGCGGGCTATAGTTTTGGGAATGTCACCACATGAAAAAAAACCCCAGCATAATAACAATCGATACGAGTGGTTAACTTGGCAGGAATTACAAACTTGCTTTTCATTCTGCAAATTGAAATTGCAGTGGTAGTGACTGACTTTCATTTAAGCAGGGTGATCACTTCCATTCGGGCTTGCTCAATTACTGTCAATGtcaacagAAGCATCTAACAAAGCTCCTGCCTTTGTATTCGGATGCTTCTCATAAATGTAACAGGACACAACACCTTAACCAAATTGGAAATCAGCTCAGTACTATCAATATCACAGGGTCAGAGGGATCTTAAAACTGCTAAGGAAAACACCACatatgttatatttaatgataATGAGACAAAAGTGAATTATGCAACAAAAAGCAAAGGGGAAAACTCcataattgcatttgttttacacCAACCCAGCCATATTGTGATGTTTGTAGATCGGAACATTTTAGACAACTACTTTTGCCGTTTCCCGTTATATGGATCTACTGGTATGTCTACTAAATAATGTGGAATGGAGTGAATTAACACCTGCAGATCTGCAAAATCCGtttgtaaaaaattaaatggtgCAACGTGGTCTTGGCATATAGGTTAAAAAGGATTTGGGGAAGGAAAACAAGCAAAGAACAGTTCATCATTCTCACAAGATCAATTATTTAGTGGTTCAGGTTTTACGGGATCCAACCGGTCTTCAATATACATGTCCacagagtattaaaaaaaacggATATGATGATCCTTAGGGGAAATTAGTGAGATTCTAGTTGTAGTTGTAATGGAGTCACTTCAGATAGCAGCAGATGTCTCCCTTTCCTCCAGCTGGGTTTTTAAACTGTACATATAAAAAGTATCGACACATTTAACggcaaaacatttgttttcctcatcTTCTCCACCCCCCGAGGTCTCGGTGAAGAGATTTCTACACCACCGCTGCCACCAGCTGCTCCTGCATTAACTGGCTTTACTCTTTTTTCTTCaccttgtctttgtttttctgaaacTTCTGGTGGACAACTTTAAGCGTAGTGAGGAAGTTGCCCAGGAAGAGGATGAGAAACGTCAAGCCCAGCATGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148418 lncRNA downstream 38851 19994143 ~ 19994359 (-) True G118440
TU148241 lncRNA downstream 454178 19577014 ~ 19579032 (-) True G118305
TU148235 lncRNA downstream 501067 19499525 ~ 19532143 (-) True G118299
TU148230 lncRNA downstream 563500 19467808 ~ 19469710 (-) False AMCG00018742
TU148225 lncRNA downstream 572701 19459926 ~ 19460509 (-) True G118289
TU148452 lncRNA upstream 20822 20056479 ~ 20057545 (-) True G118469
TU148455 lncRNA upstream 23315 20058972 ~ 20059409 (-) True G118470
TU148459 lncRNA upstream 37694 20073351 ~ 20074161 (-) True G118474
TU148460 lncRNA upstream 41168 20076825 ~ 20077042 (-) True G118475
TU148461 lncRNA upstream 41619 20077276 ~ 20077892 (-) True G118476
AMCG00018766 mRNA downstream 703 19991333 ~ 20032507 (-) True AMCG00018766
AMCG00018760 mRNA downstream 75943 19923370 ~ 19957267 (-) True AMCG00018760
AMCG00018761 mRNA downstream 119938 19894850 ~ 19913272 (-) True AMCG00018761
AMCG00018756 mRNA downstream 161316 19864992 ~ 19871894 (-) True AMCG00018756
AMCG00018755 mRNA downstream 240868 19778769 ~ 19792342 (-) True AMCG00018755
AMCG00018765 mRNA upstream 1072 20036729 ~ 20050243 (-) True AMCG00018765
AMCG00018771 mRNA upstream 51483 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018777 mRNA upstream 182720 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018780 mRNA upstream 193514 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018778 mRNA upstream 268107 20303764 ~ 20309717 (-) True AMCG00018778
TU148412 other downstream 45042 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 985633 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1558965 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2429362 17603356 ~ 17603848 (-) True G117899
TU147640 other downstream 2776939 17226090 ~ 17256271 (-) False G117823
TU148462 other upstream 42431 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 408840 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 454554 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 567861 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 567861 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile