RNA id: TU148452


Basic Information

Item Value
RNA id TU148452
length 1067
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G118469
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20056479 ~ 20057545 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGAAGACACCTCAACCTATATTTCGTGCGTAGCTGCGCGATTACGGGAAAACGGGGATCTCGACAAAGCATTGAATCTACCGCCTAGATTTACGCACACGGAAAACTGCATCTCAGAACAAGATGGATATAGGTGGCCCAAGTTTTGGAGACCAGAGGACTAGAGTTGCAGTCCGCCCAGTCCCTCATGATATTGTCTCCGTTTTActtggtttttgtttctttttttgtggaCAACACCggtgcattttaaacacaaactgtttgtttgttaagaAGCGTGAGTAGAGTGTGGTGCACATTAATTGACTTATTATAAAGCATTCAGGCTGCAGGAGCCAATCAGAAGACAGCTTCCATTTTGCTTTTCCTGCGTTTAGACTCATAAACGCGTTACATTAtgcatctttttgttttaaaaatgtgtgtgtgttgttgtataTGCAGTGCGGGGATATCCACTGCGAACATTGTCTGATATTGTGCAGTGCTTGGGCAATTGGCTGGTTAACAACAGTGGGTTCCGCCGGCCAATCAGATTGAAGCTACCATTTTAGCTCTCGCTATTAGAAGCCGAACCGAGACATCCTCCAGCAGACAGCAGAGAGGAGGCCGGGCGCTCAGGCAGCCATCTTTCTGCAATGGAACTGAATGGCCAATATGGGTTTCCTTTGTTCCAAAAGGGATCTTATACTTGATTTCTTCATCTCTTTATGGACTATATCAGTGTGTTATAATGTTTGTCATCATTAAATGGATTTAAGAAGAAGGAAGATAAAAAAATGTTGGATGTAAtccctttgcttttttttttttttttttttttttttttttttttttttttttttttttttaaagacttttaCTTTTGGAATCCATCTTTGTCCTAACTAGGTCATGGCACACCCATATGTCAGCAGTTTTAACTTTGAAGTAAAACAGTATATTCAATAAACAGCTTGTTATAGATTTTGATTGTCgaaaatatgcttttaaagtCAAATACAACAATAAGTGTTCAACAAATGCTGTAATGGCACATCATTTCAAAGTGCACACTAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148448 lncRNA downstream 20822 20033210 ~ 20035657 (-) True G118466
TU148418 lncRNA downstream 62120 19994143 ~ 19994359 (-) True G118440
TU148241 lncRNA downstream 477447 19577014 ~ 19579032 (-) True G118305
TU148235 lncRNA downstream 524336 19499525 ~ 19532143 (-) True G118299
TU148230 lncRNA downstream 586769 19467808 ~ 19469710 (-) False AMCG00018742
TU148455 lncRNA upstream 1427 20058972 ~ 20059409 (-) True G118470
TU148459 lncRNA upstream 15806 20073351 ~ 20074161 (-) True G118474
TU148460 lncRNA upstream 19280 20076825 ~ 20077042 (-) True G118475
TU148461 lncRNA upstream 19731 20077276 ~ 20077892 (-) True G118476
TU148463 lncRNA upstream 22421 20079966 ~ 20080327 (-) True G118478
AMCG00018765 mRNA downstream 6236 20036729 ~ 20050243 (-) True AMCG00018765
AMCG00018766 mRNA downstream 23972 19991333 ~ 20032507 (-) True AMCG00018766
AMCG00018760 mRNA downstream 99212 19923370 ~ 19957267 (-) True AMCG00018760
AMCG00018761 mRNA downstream 143207 19894850 ~ 19913272 (-) True AMCG00018761
AMCG00018756 mRNA downstream 184585 19864992 ~ 19871894 (-) True AMCG00018756
AMCG00018771 mRNA upstream 29595 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018777 mRNA upstream 160832 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018780 mRNA upstream 171626 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018778 mRNA upstream 246219 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018779 mRNA upstream 255640 20313185 ~ 20321631 (-) True AMCG00018779
TU148412 other downstream 68311 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1008902 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1582234 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2452631 17603356 ~ 17603848 (-) True G117899
TU147640 other downstream 2800208 17226090 ~ 17256271 (-) False G117823
TU148462 other upstream 20543 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 386952 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 432666 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 545973 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 545973 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU238001 False 2997 TUCP 0.39 5 NC_053128.1 18399147 ~ 18408028 (-)
mexican tetra (Astyanax mexicanus) TU238001 False 877 lncRNA 0.39 5 NC_035916.1 13197214 ~ 13198838 (-)