RNA id: TU148459


Basic Information

Item Value
RNA id TU148459
length 811
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G118474
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20073351 ~ 20074161 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATCCCTGAAATCTGTTACACACGAGGGGTTAAGTGAGAGGCTCACCTTGGCCGATCGCTCCTTCTTCTCCCACCACTCGTCGAAAGCCCTGAAGGCCACTACCTCCACCATCTTGCGGTTCAGGTCCCTCTTCATGATAGCCTTCAGCTCCTTGACAATCACCAGCAGGACCCCATCCACCGTGGCCTTGTGAGGGTCCTCCTTCTTGGGCTCGTACCCGGGGGGGGGCACGGAGGGGTTGAATTTAGGCAGAGGGTGCCACGGCTGCCCATGGACCATGTTGGCTGCTGGTCCTCCCCCTATGGTGAAGGGTCGGTAGGGGTTCCCGAACTGCATCTGGGCTGCGCCCCCACCCCCGCCCATAAAAGGAGGGTAGGGATAGGCCCGCTGGCCCTGCATCATGCGGCTCAACATCTGTGTCTGCATCTGGAAAGACATCTGCATGCTGCCCCACTGGGGGAGGCAGCTAATCAGGTCAACCTGCATCATGGGTATCATGTTGGGGGGGTAGTGGTGCAGCGTGTGGAGCATGGGGTGAGGAGGGACGCCCGAGGGGGGAGGTAGTGGCGGATGGGGCCCCGCCACTGCAGGTGGGGGCGGCAAGTGTGGGGGCGGCAGCGGGAAGCCAGCCTGCATCGGGGGAAGAGGCGGGAATCCCGGCGGGGGGATGGGAATGGCTTGGGGCATGACTGAGGAGGACACTGAGGAGTTGACCACGATGCCTTTGGCACAGTCAGCGCCAGTGATGGGCGTGCCAGGCATCTCGTCGTCAGATATCTCCATGTCTTCCCCGGAAGAGGGGTTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148455 lncRNA downstream 13942 20058972 ~ 20059409 (-) True G118470
TU148452 lncRNA downstream 15806 20056479 ~ 20057545 (-) True G118469
TU148448 lncRNA downstream 37694 20033210 ~ 20035657 (-) True G118466
TU148418 lncRNA downstream 78992 19994143 ~ 19994359 (-) True G118440
TU148241 lncRNA downstream 494319 19577014 ~ 19579032 (-) True G118305
TU148460 lncRNA upstream 2664 20076825 ~ 20077042 (-) True G118475
TU148461 lncRNA upstream 3115 20077276 ~ 20077892 (-) True G118476
TU148463 lncRNA upstream 5805 20079966 ~ 20080327 (-) True G118478
TU148464 lncRNA upstream 7227 20081388 ~ 20081663 (-) True G118479
TU148494 lncRNA upstream 42290 20116451 ~ 20124488 (-) True G118502
AMCG00018765 mRNA downstream 23108 20036729 ~ 20050243 (-) True AMCG00018765
AMCG00018766 mRNA downstream 40844 19991333 ~ 20032507 (-) True AMCG00018766
AMCG00018760 mRNA downstream 116084 19923370 ~ 19957267 (-) True AMCG00018760
AMCG00018761 mRNA downstream 160079 19894850 ~ 19913272 (-) True AMCG00018761
AMCG00018756 mRNA downstream 201457 19864992 ~ 19871894 (-) True AMCG00018756
AMCG00018771 mRNA upstream 12979 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018777 mRNA upstream 144216 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018780 mRNA upstream 155010 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018778 mRNA upstream 229603 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018779 mRNA upstream 239024 20313185 ~ 20321631 (-) True AMCG00018779
TU148412 other downstream 85183 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1025774 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1599106 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2469503 17603356 ~ 17603848 (-) True G117899
TU147640 other downstream 2817080 17226090 ~ 17256271 (-) False G117823
TU148462 other upstream 3927 20078088 ~ 20079882 (-) True G118477
TU148710 other upstream 370336 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 416050 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 529357 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 529357 20603518 ~ 20605820 (-) False AMCG00018794

Expression Profile