RNA id: TU148532


Basic Information

Item Value
RNA id TU148532
length 1352
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G118536
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20214770 ~ 20217179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTTTATTTTCCATTAGAAAAACCCATGGGTTTAAGTCTCTGGTAATCAATTTAATAGCTCCCGGCCACACCTATGCCATTAGTACTTGTTCTGACAGCGAGTATTACCCTGTATCCATCTGGAAGACGAGACCAATGTGGATTCATGCGCTCTGGTAGAAACTTTGCATTTGCTTCATTGGAGGGGACTTGGAATTAAACCGAGATGCCCATGTCAGCAGGTCAGCCCTGTAGACACCGCCTGGAGATGGAGCAGCGCCTGGGGAGAGAGCCCTTCACACTGCGCTTTCTCTGGGTCTTAAAGGAGCTGCTCAAATTTGTGCTGTTCAGTTACACCGTTTTGTTGGGAGCGTTGCTCTTAGCTGGATGGACTACGTACTTTATGGTTGCCAAATAAATAGTGTAATTATGATCCATAAAACACTACCAAATGTAAAAAGTAGTTGACCTTTTTGTTAatggttttgaaaaaatatgtacaaacgCATATATGCTAAAACAAAAGCTTTGTACATAACCAGTGTCAGGAATGTAATCAATTGAGCATAGCTGACTGGTTTATTtggattaaaatgtatatgtgccTTCATCGGTTTGTGCTTTGTTTCATGATTGAAAAGTTATGTTATTAACCACTGCAAATTTATCAACTACCGCTGACGGGTTTAAAATGTTGGGTGAATTCAGTTTGGTGAATAAATATGGCGACAAGTTGGAAGAAGTAATGGCTTTACAGTAGCACCCAAGTCTGTTATGGACGTATTAAGATGGACAGTCCGGAGGGGAGCACAGCTCGATATAATCCCTAGAAATAAAAAGCATctaaaaacaatagaaaattttattttaaatgcctaACAAGACTCCAATCTTTGAATAGGCTACATGCTTTATTTCAATACTCCttcaaaactgtgtgtgtgtatatatatatataaattgcaggtaatattttgttttactttaaaagtaatgtttaatgttttaacatttactttttatggtctttgattttaaaatatgttgtggacttttaattattttttaagaaaagtttACATCACGATTGACTTTTTTGAAAATCATGTTGTTTTCTGGCACAATTTGCAGTCTATGGGTCAActcatacattacatttgttgtCCCCAGTCCAGAATGAACGACTTATAATCTGCAGTAATATTTTCCATGTTTAGTGCGCTCTGTATTaaaaaactaatacattaaaTCTGTTGAGTTATTAtctaacttttttattatttagtatttccCTTTAATTCTGTACAAACTTGTGTCTGCCCTTACAAAAATGGCTTTTTCGTCCAAGAAcctgtgtttttagttttcgtAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148510 lncRNA downstream 46439 20168118 ~ 20168331 (-) True G118518
TU148507 lncRNA downstream 61783 20152727 ~ 20152987 (-) True G118515
TU148494 lncRNA downstream 90282 20116451 ~ 20124488 (-) True G118502
TU148464 lncRNA downstream 133107 20081388 ~ 20081663 (-) True G118479
TU148463 lncRNA downstream 134443 20079966 ~ 20080327 (-) True G118478
TU148709 lncRNA upstream 221780 20438959 ~ 20443273 (-) True AMCG00018788
TU148726 lncRNA upstream 265705 20482884 ~ 20485106 (-) True G118692
TU148731 lncRNA upstream 389649 20606828 ~ 20607086 (-) True G118696
TU148739 lncRNA upstream 427706 20644885 ~ 20678437 (-) False AMCG00018797
TU148758 lncRNA upstream 462101 20679280 ~ 20679555 (-) True G118715
AMCG00018771 mRNA downstream 120264 20087140 ~ 20094506 (-) True AMCG00018771
AMCG00018765 mRNA downstream 164527 20036729 ~ 20050243 (-) True AMCG00018765
AMCG00018766 mRNA downstream 182263 19991333 ~ 20032507 (-) True AMCG00018766
AMCG00018760 mRNA downstream 257503 19923370 ~ 19957267 (-) True AMCG00018760
AMCG00018761 mRNA downstream 301498 19894850 ~ 19913272 (-) True AMCG00018761
AMCG00018777 mRNA upstream 1198 20218377 ~ 20225057 (-) True AMCG00018777
AMCG00018780 mRNA upstream 11992 20229171 ~ 20279538 (-) True AMCG00018780
AMCG00018778 mRNA upstream 86585 20303764 ~ 20309717 (-) True AMCG00018778
AMCG00018779 mRNA upstream 96006 20313185 ~ 20321631 (-) True AMCG00018779
AMCG00018776 mRNA upstream 132397 20349576 ~ 20362936 (-) True AMCG00018776
TU148462 other downstream 134888 20078088 ~ 20079882 (-) True G118477
TU148412 other downstream 226602 19987674 ~ 19988168 (-) True G118434
TU148096 other downstream 1167193 19045682 ~ 19047577 (-) False AMCG00018723
TU147953 other downstream 1740525 18466368 ~ 18474245 (-) True G118075
TU147734 other downstream 2610922 17603356 ~ 17603848 (-) True G117899
TU148710 other upstream 227318 20444497 ~ 20457523 (-) False AMCG00018788
TU148728 other upstream 273032 20490211 ~ 20490738 (-) False AMCG00018790
TU148729 other upstream 386339 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other upstream 386339 20603518 ~ 20605820 (-) False AMCG00018794
TU148773 other upstream 479655 20696834 ~ 20697827 (-) False G118727

Expression Profile