RNA id: TU148616


Basic Information

Item Value
RNA id TU148616
length 3112
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G118601
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20377288 ~ 20381442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACACTGAGTTTGGCAAACTCATCTGGGAAGTTTTTCTCCAACCACTGCCTGCATTTCGCTGGTTCAGGCATATATTCACAGTACTGGGAAGAGAGGTTAGGTTAGGCAACACAATTCAAAAGCACAATTGCACTGAAATCTTGCAGAGGACTGGAAACAGTTAAAAAGTGATCTAACAAatgattggaaaaataaaatacactgcaCTATTTATagtgtaaaataatgcaatgattGCACCCTCTTGAGTCACCTAAGGGCTACTTCAGTTCACAAATTCAGCTTCCACAGGGTTGTTGCATTGCTCATTGTTTGGTTCTGTACAGGTTTATTTACATGGAGCCAGTGGTTTATATGGTTGATATATGAAATATCTGAGTTGTATTTAGAATTGTGATCATGATGTATGATGATATGCTAGGTgtgaaaaccaaaataaatgtgtggttACTGCAGATTTTAAACATACCTCTGTTGGCAAGGaacaaactgcaaaacaaaaagagaaaattaaaaaacaaacacacacattcaatgcAGGAAGTGCAAGACACATCCcagaacacacagacactttgaGCAACTAATCAATAAAACCACTTAGATACTCCTAGAACTCTTGAAAGAGACtggcattttaaagcattttttttaagtacataaCACATTATATCTCATAAGAGAACAGTCCAAACaatctaaataaaacacagagaacATTAAAGTTTACAAGCCATTTTAATTCctgaacacaaaaaaatatatcatttcagtgaatattaatatcaaattgtaaaaaaagaCTTCCCTTTCTAAATATGTAAATCAATGTATGCACTTACTAGGCATGTGCATTTTTTCCTATgtatctctctctgtatatatgggtgtattacactgtaattatttcAAGAATCCACTTATGTCAAGTTTTTactcagcaaacaaaaataaaaggggaTTTTGGAGATGCATTTCTACAGTACGGAAGAACGGAAGCATATTGCTGCGACacggaaaaaaataaaataaaaataccagtttgccaacacaaaaaaaattattaaaaaaatgcaaggtTTGGGGGCATGTTGCTGCCagggattttttctttttcttttcccttggGGTTGGGGGCGTGttgttgccattttttttttttgtccaagaccatttgtagttcttatgaGTAACCTCGCAATACGACAGAACTGGATAAGAACTGAAACTATATCGCTCCTGCGAATCATTCTGAAAATGCGTCTCTTTATGTGTCctgatatatttaattgtgttgtcattaaataaaaaccaaatGCTGCcaaaaaatatactgtttaaaaacatgtaccAGACAAAGTGCTAATAGCAAGTGTAGCCAGAGCTCCCTGCTCTGCATTCTTACCACCAACAACAGGAACCGCAGCTActccagcacagtacagtgtgaaGCCCACTAAACGGGAACAGCACGTGTGTCAGACATTGTCCACTTTTACTTTAACCTTGGTCTCCTCattaacaaatattacaatgtttgagCCACGTAAACAGAACTGTGCTCAGAATAAGAACATTCAGAAggattttaatagaaaaacataCCCACTTTACTTGAAGTAGCATTGTTTTTGATGGCAGAAATAGGTAAATAAGGGAAGCTACATGGGTATAAAATGATGCACCTTATATGACTTCAACAGGGCTTTGTGGAAAATCAAGCCACCAGACGCCTTCTCCACACACTGGATCCTGAGGgagtgtgtcacagtgtctcACACAAGCAGTATGTCAGTTTATTAACTTTCTATCCTTCCTAGCCAGTTCTGTCATATCACGAGGacccataagaactacaaatggtcttggacAATTTTTTCATGTGAACATTtggattgcattttttttcttgtaaaatgtacagaagcATATTGATGCCACAAgtaaagaggaagaaaaaaaaaaaggaaacaaactcaCAGAAAAGtgcatttcttgtttgtgttaaattaaacctcttaatataaatacactaaatgtattcatgttgaATTATGTATGACTAGCACAATTGCGTCTACACTtcttagctcattgtactaggacgTATGCTTATTGTCTTTTATACAAATGGTAtcactgcactttgtaatgatttgaaatgtttgtgtaaactgtaagtcaccctggatgtctactttgaataaataaatacaaataataaacctatttttatttcttgtgaaaTTTTCAAATCTTCTCAGTTTTGTTAGTTTAAATTATTCCAAAAACAATCtggcaatttaaaataaaatgagaaaacgTCAAAGCAGGTAAGTAGCCTtcccccccccttttcttttttcctttagATTTTACAGGAAGAACAACATCCTATCTAACCAAAAAAAATGAGGTATGGTGTTTCTGTGTGGGGAAACACAAGGATGACCATACAGGTACAAAAGCACGTTAATTGAAGATTTAtcaaggatgtttttttttattgtgtgtgcgtgtatgtatgcatgtatgtgtatgtatatatatatatatatatatatatatatatatatctacacacatacacgcacgatatatatatttgtaaactgTTAGCAGAACTGTCATACACATTTCAATACTAGATTCTTGTCACCACaattgtattactgttattCTCATCTGTAGACTGAATTTTTACACCAAGCATAAGGACATTGATCAATCAAATTTAATCCTACTAAAAAACACCAGCTGAAgcacaattaaatgtttgagaGTACAACATGTCAATATGACTCAGCTTTTATGAGAACTCCTTCATACCTCCACAGTAGAGCACTTTCAAAGGGTATTTAGCGTTGGAGTCAGCATGCCTGCGATCCACTTTGTTCTCTGGTGAACCTGATTCTGCATTTTCAGTAGTAGCCATTgttatattttctaaaacaaagaacaaaaacagagagagcaTTATTctactgaaatgtattaaacagaTCCAAAAACTGTGGAAAGTCTTTTTCACTACAGCAGAATGCAAGACTTTAGGCCAATGGGTTTGAAAATTGCCAAATGGTGCCATCTAGtgaataagaaagaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148612 lncRNA upstream 2476 20372219 ~ 20374812 (+) True AMCG00018781
TU148577 lncRNA upstream 74330 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 77458 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 382959 19994126 ~ 19994329 (+) True G118410
TU148240 lncRNA upstream 798257 19576964 ~ 19579031 (+) True G118304
TU148629 lncRNA downstream 57518 20438960 ~ 20443229 (+) True G118608
TU148639 lncRNA downstream 109419 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 118232 20499674 ~ 20500210 (+) True G118620
TU148642 lncRNA downstream 119508 20500950 ~ 20501433 (+) True G118621
TU148643 lncRNA downstream 122674 20504116 ~ 20504507 (+) True G118622
AMCG00018781 mRNA upstream 2541 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018775 mRNA upstream 28346 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018774 mRNA upstream 64732 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018772 mRNA upstream 169834 20202428 ~ 20207454 (+) True AMCG00018772
AMCG00018773 mRNA upstream 180184 20189590 ~ 20197104 (+) True AMCG00018773
AMCG00018784 mRNA downstream 1687 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018783 mRNA downstream 26631 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018789 mRNA downstream 76523 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018782 mRNA downstream 95684 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018792 mRNA downstream 220569 20602011 ~ 20603279 (+) False AMCG00018792
TU148611 other upstream 2476 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 116348 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 402558 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 926660 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1655945 18719206 ~ 18721343 (+) True AMCG00018702
TU148644 other downstream 132718 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 211294 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 211924 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 220514 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 374187 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile