RNA id: TU148629


Basic Information

Item Value
RNA id TU148629
length 4270
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G118608
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20438960 ~ 20443229 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagatataaaaacatcttatttattaGACTTAAAATAGTCAAGAGGTAACTTATGCAGTCCACCACTACAATCTTCATTAGTCATACAGCACAGTATTACAATACAGAATCGAGTTATTTTACATTAGGAGTGTACAAGAATCTATCTTACATTATAAAACAGCGGTTTCTGAAAGCACAGTACAGGAATGAGGCCTGTATGTCACAAAAGGTCTATGTTTTGACTGTTGTCCATGTTCACACTGAGAGGGATACATCAACATCAAGGATGAACACAAATGTTTGTCTCAGAtgcagacagaaaaagaaagtaaaacacacacacatatacaggaAAAATTTTTTTTATACCAACATGCTGGTTTTCTCACAGGTAGTTTGGCAATCTATTAAGTTggtatacttattattattacattgacAATCAAGGCAAATGGCTTATTTTGCTGCACCCAGATTTGAGGACAATGTGACCCCGACTCTATAATTGCCTGAATAGCTAATCTGCCACTGACAACATCCCTAACCCTGTACAGTAAAGTGCTGGAGTAGCTGGAGAGTTGCGATTGCTTTGGGTTGTGTTAGTCAGCGCAGGGCTGATGGCTTATTTTCAGCTGACTATGTAAGAACCAGGATTGGTTCCCTTGCTAGTCCAGTCTCTccattattgtgtttgtattcataaaaaaaaaaaaaaaatccataaaaataacagcaatttCACAAAAAGAACCAAGCATAGGGGAGGTCACGCACGGCCTCCGGAGGAATCAGGGGTCCCGTACATCACAGAAACTGGCTCCGTGTGCACAGACATGCAGACAGGTATCCACGGCTAGTGAAAATACACATTACTTCTCTCCTGCAGCCCAAAGCCACTCTGGCCTTCTTCAATCCAGAAGAGCTGCTTAAACTGGTGAATGAACGGAGCAGAGAGAGCACACACGGTATTCACGGGCTGAGTCTCTGTGCCCTGACGCCGCCGCCAACTTCTTCTATTCTGCTGAGGCACGTATGCGCTGTTGAATAGTTTCACAGCATTCCAGTCCTTCCAGAGGAATAGACAATGGTGAAATGAAGGTCCAATTAGAGCACCTGTACTACGGCATTCCTTGTTTTTATGCCAGTTTATGAAACCAGAATAATGTAAAACACTAGCCACTAGTTAGTTTTACCTCTTTCTAGAGAGAAAGACAACATCcagattaatgtaaatatacaaacagGTTAAGTTCTGGAGCTATTTACAACAGGGCTGCAATCACCATACAAAGTCAACAggaaaaagaaataagaaaactaaatttgGTGGTCAGATATGCTACCGATATGTAGGCTGGTACAAAACGAAGGCCCAGACATATACAGAAGGCCATCATACGTTATTTGTAGTGTTCATTGGTTTGTATAAAATCTCCCTGTTAGTTTGAAGACATGAATCCCAGCAGTTAACCGCAGAAAGAGTCTGTACACTCAGATAGGAGCGATGGCTTCGGTGGGAGAGTATTAGAAGCACAGTATAGCAGGTTGTTAGATGTTCATACTGTGGCACTTGTACCTGATAAGAGTATCGGAAAAATAACATGAcacatcagattttttttttttttacaagttaTAGAAGTGTAAgcatacaacataaataaaaaaacaaaaccttacaaactgaaaatgtacagaTCATATTACTATACtaaggttttatttgttttgggggtggggtgggagagtatatatacaaagaagaagtaaatacaaactatttcACCACAATCCTTCTGAGAGGATAAACAATGTGAGAAAGGTACACAGTTCAGTTTTCAGTTGTACAATTTAACAAGGTCTGTTCATGGTGTGTGTTGGTAtacagatacatagatagacagCTAGAGAgatgtctgtctatctatctatctatatacactgCAGAGTTCTCCTCCGGAAGTTCAACCCAAGATGGTCATTAGGAGGGCGAAAGGCATCAGTATTGGTCAATAGGGGAAGCTGAAGCAAGACGTTTTTTTGTGACACCCAAAGACAGTTCCCGTAGTCTAGCACTATAAATGACACCAAATCAACTGCATACAATATCACCTCCAAGATCTTCAAATCAGAGCTGGAGATCAAAGTGCTAGAGTGATGATACAGCACCACGGCTTCACTCTCTGGGGAGGACCCTGTGTTGGATGTGTATAATGATGCATAGAAATAGAGGGGCACTCATTTCAGATATCAAAAAGGAACCCGAGTTTACAGTTCCTGGTTTGCAATGTTAACACCTGTGAAGAACAGTACTGTAGAGACTTTGGTTCATAGACCTTGTCACATCTCAGCCTTCTGAGGACACCTGACAAGTCCAGAGGAATGAGACACTATGAGTTCAGCTGTCTCTGGACAAGGCTTTATTCAGTGTAAAACAGCTCTCGTTTACTGCAATGGGGGCTGAGCAGGAAATGTTAAAACTAACATGCTATTCCAGGAAGTAATACTCGATgccacacagtgacacacagctgGGGGCTGGCAAACCCTTTCTGTTGCTATGTCACAATGAGAGGAGGGCTGGAGACTCGCTGTGTTATTTGCTTCCTGTTAAGTATTCTTCCCCACAGACTTGATCaacaattaacaaaaactattttctgggtaaaacaaaagtatgcagccagtaaagcacagtaatttggggggggggggctgcctTCTTAAACTCCCCTCTCTCACAATAGACAACAATAGCAAATGTGCTTGGTTTAACCTATCCTGAGATACAGCATGAGCCTATCAAACACACCTACTGTCTTTTACCTTCACCTACCTACTTTTAttgcttcttatttttataGAACAAAAAAGCATGcgtgtatatacattttctttttacaaatcTAGATGGGCCCATACAAATAAagctctcccttctctctctctcagaagtACCATGGAGCTCTCCAGATCTAGCTGGTCTGGGATGAGGTTGCGGAGATACAGTGTACGGATTGGAGCGGTATTAGCGTCTGCACAGCCCTCGGACTGCGCCGCACTGCCATTGTATACATTCACACAACAGGTCAAACCCCCTTCACCGATCACCAGTCAGCCACTGCTCCCCTACTCTTCCCCAGCAACCCACAGGGGAGCCACGAGTGTTCTCCTTCTACCTACATTTCTACTGCATATAGACTATGTTCAAACAAATCCCCTTGAAGGAAGGGCTTGCAggtttcaatgtttttcacTCTGTTGTTTTTAGTAATATACATCACATAGGCATGATATAGGGGACTGAAGTTAAAAGCACCTAGAGTATTCTCTCCTTAGTTTGTGATAAATGCTTATTAAATTCATACTCCCTGAAATTGCTTtgcaaaaacaatttaaaaaaaaatgcacattacaGATGCCACTATTAAAAGTTAGAGATATGTAGTTCTCAACTAAGTTTATCGGCAGGACGGGGCAGCTTGTtagtgaaattgtattattcctAAAATGATTGTATGGATTCCTATTATTTCTCCCCCATGAATATCTAGATATTATCcagtttttccattattttgaaatattctaATCATTaaatctcatatatatatatatatatatatatattaaaaacactaatgTCTTAAGTACtgaaataggaaaaacaaaaagcaaataacaAAGAAACTTAACATCTTTGGCTAcaggtttgctttttttaaccTGGTCATCAAAAATGCTAAAACCCTCTTAAGTAACATGACATAAAAATCTAGATCTGGTTTTAGTACGTTTATAAAACAGCACAGTATAGTCTCAGTCTTCTGTTTGCATAATGTTTTCTCACTCTCGTTGGCACAGCTGAAAGTCAGTTGTTTGCCGTTATCCATGTCTACTGTAAAGCTGTCTGTCATGAAATGGGTGGaacattttttataatgcaGGAACTAAACAAACGAGCAAAAGACATTCAAATacgtattttttttctccatccgTACAACAGAGGACAAAACCGAAATCGGTACCATATGAAATATTCAGGCAAAATGCTTCACTCAACAGCAAATACTCTTACTAAAATGCACACCACATTCAGCCCTAGATAGCCAGAAAGGAGCAGAAATagaatttattttggttttcttttttaagcgAATTAAATGTTaggaaaaaaactcaaaatataTACCTccctctgtttttttaatatataaaaaaaggtttccGACTCAACTAAGAAATTCacgtttttgttgtgtttgctgTTGCTATTAAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148616 lncRNA upstream 57518 20377288 ~ 20381442 (+) True G118601
TU148612 lncRNA upstream 64148 20372219 ~ 20374812 (+) True AMCG00018781
TU148577 lncRNA upstream 136002 20302670 ~ 20302958 (+) True G118572
TU148570 lncRNA upstream 139130 20279288 ~ 20299830 (+) True G118566
TU148377 lncRNA upstream 444631 19994126 ~ 19994329 (+) True G118410
TU148639 lncRNA downstream 47632 20490861 ~ 20491106 (+) True G118618
TU148641 lncRNA downstream 56445 20499674 ~ 20500210 (+) True G118620
TU148642 lncRNA downstream 57721 20500950 ~ 20501433 (+) True G118621
TU148643 lncRNA downstream 60887 20504116 ~ 20504507 (+) True G118622
TU148645 lncRNA downstream 74030 20517259 ~ 20517494 (+) True G118624
AMCG00018783 mRNA upstream 5305 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 40623 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 64213 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018775 mRNA upstream 90018 20322418 ~ 20348942 (+) True AMCG00018775
AMCG00018774 mRNA upstream 126404 20311158 ~ 20312556 (+) True AMCG00018774
AMCG00018789 mRNA downstream 14736 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018782 mRNA downstream 33897 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018792 mRNA downstream 158782 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 187774 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 199100 20642329 ~ 20645241 (+) True AMCG00018791
TU148611 other upstream 64148 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 178020 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 464230 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 988332 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1717617 18719206 ~ 18721343 (+) True AMCG00018702
TU148644 other downstream 70931 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 149507 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 150137 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 158727 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 312400 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile