RNA id: TU148651


Basic Information

Item Value
RNA id TU148651
length 1645
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G118630
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20585628 ~ 20590502 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCGATATGCACGGTGGGGAATGTGGCTCTGTGTCGCAGACTCCCTGAAGtcacagaaacagacatttcAATCTGGTCCAGCCTGACCCCGAGTAACCCCTCCGTCTCGGCTACATTCAAGTGCTGGTTTCCTAGCAACCAGCACATGTCACATTCATGTCGCGAAAACGGGCGAAAACGGGCGAAGCGGCGGCGGACTCACCCAGCAGCGCCGCGTCCGTCCTCTGCCTCCAACGTGTAGCTATAATCCTCGTATCCCGCCAAGGCAGCGCAGTATCGATCTacgacattcaaacaatacagtacaaatgtgCTGAAAACGGGGAAAGACTCCAAATGTAACCCGCCCTCCGCCCTTCTGTCGCTTTCCGTCGTTTAATGTGGACTACAGATATGTAGGAAGGAAGAATAATTCAGTATGGGACTTACAGCATTGGAGTACTCGCTTTCACCTAAAAACGGCCAAAATTGCTCTGGCCTTCAGCATTGTTGCACTAGTCAGAATAACTGTAGTAGCAGGGGGTCACATTGTACAGCAGACGAGCAGCTAAAGAAGCCATGGACGTCCTTGACTTTCTAGATATCCCCGTGTTGTCAGTTTCACAGATTGCCGTGCTGCCCGGTCTGTCTGTACAGAGCGACACTGTCAGGATGTCgctagtttgtttttttgtgtgtgttttttttcttcttctgCACAGTGAGTGTGTCGAAGTGCACTCTTACCTGCTGCTTCTCTTGCGTGAGCTCGTCAAAGAGCCGCTCAGTGTCGGCCAGCGACTCCAGCCGGGCCTGGTAAGTGAGCTGTGATTCGTAGGGGGACAGCAGCTCAGCCCCGCAGccctcggcctcctcctccCAGGCCGGCCGACCGCTCACGGCTCCCTGCCTCACGGCCCGCATCGCCGACTCTGTACGGCTATCAAGTCTGAGTCCAGAGTTACTTGGATGATGACTTACTATAAAAATATCGGCAGTCCAACACATGCATCAATCTATGtcatacttaaaaaacaaaacatttaaaagacattGAAAATTTAATTCAACAGAAACAACAAGCACCCTGAAGTTAAATTCAATTGCAACAACCTCCACCCACCCCCTTACTTGCCAATCGATTCTGGTGTTTTAAGCTACAGCAAACATATCAGAAAAAAAGCTCTACAGTTCTTTGCAGCCGTGACAGAATGTTTAAGACATGTTTTGCAGGATCGTTAAACTCTTATTTACCTCCGGATTCATCCAGTGACATAAACTGGAGTCTCTTCCTGGGACTGGAGCTGCGAGATGGGGAAGCAGATGCATGAGCATCTTCATCTATTTGTACGTCAAACCTGAGTCACGTGAAGCAGAGCAAAGCAGAAAAAGCACAGCCATGATCACTGGAGCACAAGCCACTCAGCAGACAATAAGGACATCAGGCTTGGGGTTCATGTAAAGTATTACTTACCAATGAATTAACACCACCCAACCACCCATATACCCAAGTACAATCAAAATCATTCCTTCATTTCATCCAAGTGTTTTATCCCCCCTCCTTCCGATATCCTACTAAacaatttgattttctttgctCTAATTACAAAGAACCAGATTCAATTATGTTACAGTGGCAATTATCATACCATTGACTAAGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148647 lncRNA upstream 9621 20536734 ~ 20576007 (+) True G118626
TU148646 lncRNA upstream 61907 20523438 ~ 20523721 (+) True G118625
TU148645 lncRNA upstream 68134 20517259 ~ 20517494 (+) True G118624
TU148643 lncRNA upstream 81121 20504116 ~ 20504507 (+) True G118622
TU148642 lncRNA upstream 84195 20500950 ~ 20501433 (+) True G118621
TU148654 lncRNA downstream 61 20590563 ~ 20591175 (+) True G118633
TU148652 lncRNA downstream 691 20591193 ~ 20591550 (+) True G118631
TU148653 lncRNA downstream 1183 20591685 ~ 20591925 (+) True G118632
TU148655 lncRNA downstream 1573 20592075 ~ 20592422 (+) True G118634
TU148658 lncRNA downstream 4671 20595173 ~ 20595580 (+) True G118637
AMCG00018782 mRNA upstream 100699 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018789 mRNA upstream 122279 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018783 mRNA upstream 151973 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 187291 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 210881 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018792 mRNA downstream 11509 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 40501 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 51827 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018799 mRNA downstream 80334 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018800 mRNA downstream 88778 20679280 ~ 20695194 (+) True AMCG00018800
TU148644 other upstream 71137 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 210816 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 324688 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 610898 19971139 ~ 19974730 (+) True AMCG00018762
TU148213 other upstream 1135000 19448626 ~ 19450628 (+) False AMCG00018740
TU148656 other downstream 2234 20592736 ~ 20593016 (+) True G118635
TU148657 other downstream 2864 20593366 ~ 20594139 (+) True G118636
TU148663 other downstream 11454 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 165127 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 597454 21187956 ~ 21189246 (+) True G118815

Expression Profile