RNA id: TU148657



Basic Information


Item Value
RNA id TU148657
length 774
RNA type TUCP
GC content 0.53
exon number 1
gene id G118636
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20593366 ~ 20594139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACCTTTCCATTAGACACTGATTGGTTTTCTCCAAGTCATCGGACAACGGAGGCCTGTTGACGGAGTCCAGTTTTTGTCTTAAACTGCTGATCTCCAATTCATAATAAGCCCGAAGGTCCGCTATGTGACGTGAATGTTTTTCCCTCAAGTTTTGCCTGACGCTGCAGGGAGAGGAAGACCAAACAACACATCACTAGTCACGGAGTGCACTGGGGAACAACAGGAACATATCCTGATAGAAGATGATGGAGACAAACCCTTACAGAGAAAGGACAACAGGGTCTTCCAACGAGGACAGGGATGCTGTCTTTTCAAGAGGCCCCACAGCCCGGCTGGCATGCATAGACACTGGGGTGTCCTTTCTGGACTGAGGTGTGAGGGTCGAGTGGATGCCTTCACTCTCTGTGTGCGCTGAGCTGCTGCCCATTCCTCCATTGTGGAGAGCTGGACGCGACCTGCTTGTACTTGACACTTTGTGCGAGGTAGAGGGAAGGGTCCAGCTCTGGACCGGGACAGCGCTCCTGTCTGAGGACGGCTTATGTCTTACTTTCACCGGGGCTGCCGATAAGCTGCTGGTGTTGGAAATGCAATCAGAGTCTGTATGGCTTTCAGAGGGGCCTTCAGCCATGGAGTCCGGGCTAATCGCGGGAGCTCCAGCAGCGGAGGGCTTGGGGTTTGCAGTGAACGGCAGTCTGATGAAATGGGAGGGCGAAGTGAAGCCGGATTGCATGTCCGGTGGTTTCATGTGCAGAGTTGGATCGAGGGTCAACacct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148655 lncRNA upstream 944 20592075 ~ 20592422 (+) True G118634
TU148653 lncRNA upstream 1441 20591685 ~ 20591925 (+) True G118632
TU148652 lncRNA upstream 1816 20591193 ~ 20591550 (+) True G118631
TU148654 lncRNA upstream 2191 20590563 ~ 20591175 (+) True G118633
TU148651 lncRNA upstream 2864 20585628 ~ 20590502 (+) True G118630
TU148658 lncRNA downstream 1034 20595173 ~ 20595580 (+) True G118637
TU148659 lncRNA downstream 2329 20596468 ~ 20596692 (+) True G118638
TU148660 lncRNA downstream 2962 20597101 ~ 20597607 (+) True G118639
TU148661 lncRNA downstream 3736 20597875 ~ 20598118 (+) True G118640
TU148662 lncRNA downstream 5652 20599791 ~ 20600356 (+) True G118641
AMCG00018782 mRNA upstream 108437 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018789 mRNA upstream 130017 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018783 mRNA upstream 159711 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 195029 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018781 mRNA upstream 218619 20374037 ~ 20374747 (+) False AMCG00018781
AMCG00018792 mRNA downstream 7872 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018793 mRNA downstream 36864 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 48190 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018799 mRNA downstream 76697 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018800 mRNA downstream 85141 20679280 ~ 20695194 (+) True AMCG00018800
TU148656 other upstream 350 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 78875 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 218554 20373996 ~ 20374812 (+) False AMCG00018781
TU148559 other upstream 332426 20259377 ~ 20260940 (+) True G118557
TU148369 other upstream 618636 19971139 ~ 19974730 (+) True AMCG00018762
TU148663 other downstream 7817 20601956 ~ 20603315 (+) True AMCG00018792
TU148789 other downstream 161490 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 593817 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4639943 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4890158 25484297 ~ 25485446 (+) False AMCG00018913

Expression Profile