RNA id: TU148666



Basic Information


Item Value
RNA id TU148666
length 1108
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G118644
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20607648 ~ 20620547 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttcagttctttttttttttagatttattgGTCATTTGCAAGATGTCAAAATCTTGCTGCAATGTATAACAGATTTAAATTTCAATATACAATGAATCTGTCAGTAGTGCAACTCGTGCAAGCATGAAATGACATTGTCCttcaatatttttataaacatcAAATGTACTTATAAGccaacatttttttccagatttaagaTATGTAACTATACACATTTTGTACAGCAAATAATTCATACCAGCATAGGAGAAATCTATCCTGCCTCACAACATTTACAGCACTTAAATGAAAAGCGCTTATAAAGGTTTGCGTCCCATCATGAAGTTATGTCTGAATTGTTTCAAGTGGCAGCAAATATTAACAAGTGGAAAtagaaagttaaaaaatataaagcaagACCACAATTTGGAGTGGCCTCGTGACATTCCAGTTTACAGACTGACATTTTAAGTAAAGAAAAGGTAAAATGTATACCttcataaacacattaaatatcaAACAAATGACTGATGTGAACTTTAGAAACTGAGATCAGTTTCATTAAAGAATGGTTTTTATAATGAagtaaaatgggaaaaaaactaaacaattataattatggtCATAGAAAGTCACAGCTATGTAACATTGAACCCTGTAGTGAATATGGCCTTTAAAAGGAGCTTACACCTTGGCTACCATCTTCAAGAGCAGGTCTGTGATGTGTGAagtgaaagaaacagaaatgtggTAAACTTGCAATGTCATGCTTTAGACACGTATGCATCAGCACACTGAAGAAAGAGGGGGAAGTGACATGCATTAAGATATATTCCCAGCATatcagtcttaaaaaaaaagtgcgaTTGTTTTAACCCCTGAGCACTGTCATATCATGTCGAATAAAGGAAACAGTTCAAGCACTTCACTTGCAGGGAATACAGAACAAACCTGTAATTATGAACAAAAGCCAGTAGAAAGCACATGAAAAggcatatgaaaaaaaataaccccTTCATCAACGCTTACATTTCATAGGCATGTATTCAGCATATGTCTCTGCATGACCCAgctcttcatcctcctcctcttcggGTTCTTCCTCTTCTTTAATGCCTGGTATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148668 lncRNA upstream 1551 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 7292 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 9530 20597875 ~ 20598118 (+) True G118640
TU148660 lncRNA upstream 10041 20597101 ~ 20597607 (+) True G118639
TU148659 lncRNA upstream 10956 20596468 ~ 20596692 (+) True G118638
TU148752 lncRNA downstream 64318 20684865 ~ 20687644 (+) False AMCG00018800
TU148823 lncRNA downstream 301821 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 750363 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 1060773 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 1227868 21848415 ~ 21853057 (+) False AMCG00018820
AMCG00018792 mRNA upstream 4369 20602011 ~ 20603279 (+) False AMCG00018792
AMCG00018782 mRNA upstream 122719 20477126 ~ 20484929 (+) True AMCG00018782
AMCG00018789 mRNA upstream 144299 20457965 ~ 20463349 (+) True AMCG00018789
AMCG00018783 mRNA upstream 173993 20408073 ~ 20433655 (+) True AMCG00018783
AMCG00018784 mRNA upstream 209311 20383129 ~ 20398337 (+) True AMCG00018784
AMCG00018793 mRNA downstream 10456 20631003 ~ 20637704 (+) True AMCG00018793
AMCG00018791 mRNA downstream 21782 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018799 mRNA downstream 50289 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018800 mRNA downstream 58733 20679280 ~ 20695194 (+) True AMCG00018800
AMCG00018804 mRNA downstream 75135 20695682 ~ 20697892 (+) True AMCG00018804
TU148663 other upstream 4333 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 13509 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 14632 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 93157 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 232836 20373996 ~ 20374812 (+) False AMCG00018781
TU148789 other downstream 135082 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 567409 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4613535 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4863750 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5840073 26460620 ~ 26461227 (+) True G119762

Expression Profile