RNA id: TU148759


Basic Information

Item Value
RNA id TU148759
length 429
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G118716
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20680610 ~ 20681038 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtATGTGTCAGGGATCTCTCCGTTTGGCCACAGGGGAAGATTACTAATCCAAATGCTGGCTGATGCCACCAggaatgacaacaacaaaacacatggCTAGGTCAGCACTGGAACAagacatttttccattttcgTATAGTACTCTGAGTAGTTACCCATGCTCTTTAAATTTCTCCACGTCTTCGATTGGATTACTGCCTCCGATTAAAAGGATTTGActgaaagaaaggagagaggcCGTTAAAGAAATGGGATGAAGCCAGTGAGTGGTGCAGGAGCTCTGAGGGGGTCAAGCTCACATTTCAGAAGCGCTCACCTGAACTGAGGGAAGTGCTGGAGGAAGGATGCCATGACCCCACTAATCTGAGAGGCCAGCTCACGTGTGGGAGTGATAATCAGAGCCCCAACCTGCAGTAAAAACTCAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148758 lncRNA downstream 1055 20679280 ~ 20679555 (-) True G118715
TU148739 lncRNA downstream 2173 20644885 ~ 20678437 (-) False AMCG00018797
TU148731 lncRNA downstream 73524 20606828 ~ 20607086 (-) True G118696
TU148726 lncRNA downstream 195504 20482884 ~ 20485106 (-) True G118692
TU148709 lncRNA downstream 237337 20438959 ~ 20443273 (-) True AMCG00018788
TU148760 lncRNA upstream 86 20681124 ~ 20681365 (-) True G118717
TU148761 lncRNA upstream 505 20681543 ~ 20681784 (-) True G118718
TU148762 lncRNA upstream 1041 20682079 ~ 20682291 (-) True G118719
TU148763 lncRNA upstream 1916 20682954 ~ 20683354 (-) True G118720
TU148764 lncRNA upstream 2628 20683666 ~ 20683959 (-) False AMCG00018805
AMCG00018797 mRNA downstream 18368 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018798 mRNA downstream 38734 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018796 mRNA downstream 55924 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018794 mRNA downstream 73867 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018795 mRNA downstream 78860 20587589 ~ 20601750 (-) True AMCG00018795
AMCG00018805 mRNA upstream 2648 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018808 mRNA upstream 95881 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018807 mRNA upstream 241335 20922373 ~ 21012691 (-) True AMCG00018807
AMCG00018810 mRNA upstream 461017 21142055 ~ 21146883 (-) True AMCG00018810
AMCG00018809 mRNA upstream 467494 21148532 ~ 21175765 (-) True AMCG00018809
TU148729 other downstream 74790 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 74790 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 189872 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 223087 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 600728 20078088 ~ 20079882 (-) True G118477
TU148773 other upstream 15796 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1399426 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2123307 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 4394360 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4453733 25134771 ~ 25171644 (-) True G119538

Expression Profile