RNA id: TU148771


Basic Information

Item Value
RNA id TU148771
length 520
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G118726
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20695669 ~ 20696188 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTGCCATGCTTGAGAGCTCTGTTAGCGGCCAGGTGAAGAGCCGTGTCCCCTCTGCGGTCTTTCCTCAGCGGGTCTGCGCCCTTCTTCAGCAGCAGTCTGAGGACAGCGTCGTCGCCCAGTGAGCAGGCCAGGTGTAGCGGGCTCCGGCCCTTGCTGCCCCGGGAGAAGTTGAGCTCGATGTCCGGGTGTTTGCGCAGGTACGACTTGAGCTTCAGCAGGCTGCCCTCCTCCACGTAGCGCAGCACACGCTTCTGCCGGCGAGACGCCATGGACACAAACACGCCCGTGTCCGAAACCTGGCAATTGTGTTGTTATCCCTCTACACAATCATAAACACCAAGACTCGGAATGACATGTATACAGCCACTTGGCTATTTCTATTTTCGTTGGTCTAAAacatcttaattaaataaaacctaccCGTTAAATTATGAGTGTTAGTGCTTGTTATAAGGAGAATATAATTCCATTAGGCTGAGTGATATCAAAGATCCTCACTGTCGGCGGCTGATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148764 lncRNA downstream 11710 20683666 ~ 20683959 (-) False AMCG00018805
TU148763 lncRNA downstream 12315 20682954 ~ 20683354 (-) True G118720
TU148762 lncRNA downstream 13378 20682079 ~ 20682291 (-) True G118719
TU148761 lncRNA downstream 13885 20681543 ~ 20681784 (-) True G118718
TU148760 lncRNA downstream 14304 20681124 ~ 20681365 (-) True G118717
TU148774 lncRNA upstream 646 20696834 ~ 20697827 (-) True G118727
TU148783 lncRNA upstream 27392 20723580 ~ 20723781 (-) True G118735
TU148874 lncRNA upstream 412382 21108570 ~ 21108801 (-) True G118808
TU148977 lncRNA upstream 870821 21567009 ~ 21567253 (-) True G118870
TU148992 lncRNA upstream 898806 21594994 ~ 21616493 (-) True G118881
AMCG00018805 mRNA downstream 5747 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018797 mRNA downstream 33427 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018798 mRNA downstream 53793 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018796 mRNA downstream 70983 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018794 mRNA downstream 88926 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018808 mRNA upstream 80731 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018807 mRNA upstream 226185 20922373 ~ 21012691 (-) True AMCG00018807
AMCG00018810 mRNA upstream 445867 21142055 ~ 21146883 (-) True AMCG00018810
AMCG00018809 mRNA upstream 452344 21148532 ~ 21175765 (-) True AMCG00018809
AMCG00018811 mRNA upstream 480644 21176832 ~ 21180489 (-) True AMCG00018811
TU148729 other downstream 89849 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 89849 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 204931 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 238146 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 615787 20078088 ~ 20079882 (-) True G118477
TU148773 other upstream 646 20696834 ~ 20697827 (-) False G118727
TU149076 other upstream 1384276 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2108157 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 4379210 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4438583 25134771 ~ 25171644 (-) True G119538

Expression Profile