RNA id: TU148774


Basic Information

Item Value
RNA id TU148774
length 788
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G118727
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20696834 ~ 20697827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATAATATACAGTGCTATGTGCAGGAATAATGTTAAAACAgaggcacaaacacacatggagtagtagtattttattaacaaagcGAGCTGCAGTCACTTCATGCTCTCGGACAGTTTATTGAGCTCCTGGGAGAGAGCGGTCACAGTGTCTAGGatcctccctctctcgctgTCCTCCAGCCGGGCCCCGCAGCGCTGGGCGAACTTGTCCGGGTGCCAGAGTGTCTGCTGTCTCTTCAGCAGCTTGCGGAAAGCGGTCTTGTCCTTGCGGTCGGCCCCATGCAGCATCACCTCCACCATCTCCCGCACCGAGCCCTGCGGCGCCGGCCAGGGGATGTCCGAGTAGCCCAGCCTGGAGTCCGACCCTCCCTGGAAAGTGGCAGCGCACTTCTCCTCATATCTCTGCTTCTTCCCTAACCGAACCTCCTCTGCCTTCCTCGCGGCTCGGGCCAAGTACTCGGCATGCTCTGCTTCCAGTCTGGCTTGGAGCTCTTTGTGGCTTTCGGCCTCCTgctccttcttcttcctcttcctcccgcTCACGGAGCCCTCTGCCTCTCTTTGGGCCTGGGCGCGCCGCTTCTCATGGTACTCCCGCCTGATCTGCTCAGCCCAGTCCACAAAATCATCTGGCTCCGCATCCTCCCTGGAGAGATCATCTGATtTGTCATACTGTCCAAACGTCTCGAAGAACTCATCCTGGCATTCTCCGAAAAGCTTTTCTCGCCACTCCTTTTCAGGGTCTGTTTTTGTAGTGCCGTCTCCTGCCATTGTTGCATCCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148771 lncRNA downstream 646 20695669 ~ 20696188 (-) True G118726
TU148764 lncRNA downstream 12875 20683666 ~ 20683959 (-) False AMCG00018805
TU148763 lncRNA downstream 13480 20682954 ~ 20683354 (-) True G118720
TU148762 lncRNA downstream 14543 20682079 ~ 20682291 (-) True G118719
TU148761 lncRNA downstream 15050 20681543 ~ 20681784 (-) True G118718
TU148783 lncRNA upstream 25753 20723580 ~ 20723781 (-) True G118735
TU148874 lncRNA upstream 410743 21108570 ~ 21108801 (-) True G118808
TU148977 lncRNA upstream 869182 21567009 ~ 21567253 (-) True G118870
TU148992 lncRNA upstream 897167 21594994 ~ 21616493 (-) True G118881
TU149003 lncRNA upstream 983506 21681333 ~ 21681557 (-) True G118886
AMCG00018805 mRNA downstream 6912 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018797 mRNA downstream 34592 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018798 mRNA downstream 54958 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018796 mRNA downstream 72148 20608895 ~ 20624686 (-) True AMCG00018796
AMCG00018794 mRNA downstream 90091 20603495 ~ 20606743 (-) True AMCG00018794
AMCG00018808 mRNA upstream 79092 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018807 mRNA upstream 224546 20922373 ~ 21012691 (-) True AMCG00018807
AMCG00018810 mRNA upstream 444228 21142055 ~ 21146883 (-) True AMCG00018810
AMCG00018809 mRNA upstream 450705 21148532 ~ 21175765 (-) True AMCG00018809
AMCG00018811 mRNA upstream 479005 21176832 ~ 21180489 (-) True AMCG00018811
TU148729 other downstream 91014 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 91014 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 206096 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 239311 20444497 ~ 20457523 (-) False AMCG00018788
TU148462 other downstream 616952 20078088 ~ 20079882 (-) True G118477
TU149076 other upstream 1382637 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 2106518 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 4377571 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4436944 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 4488380 25186207 ~ 25187408 (-) True G119545

Expression Profile