RNA id: TU148874


Basic Information

Item Value
RNA id TU148874
length 232
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G118808
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21108570 ~ 21108801 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagacttcctacatcctggacggtgaaagctaagtgctgtcaagatgtagggttacagacgagggctacgggaaagggagcaaggaggaaaacaatcaagaatgcgaggagcataataagctgaagtgctatctagcagggatagaggactaatattacaagtgctgttggaagagatgcgtcttgagtaagcgccggaatgaggtcaagggctctgctgttttgacttcgg

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148783 lncRNA downstream 384789 20723580 ~ 20723781 (-) True G118735
TU148774 lncRNA downstream 410743 20696834 ~ 20697827 (-) True G118727
TU148771 lncRNA downstream 412382 20695669 ~ 20696188 (-) True G118726
TU148764 lncRNA downstream 424611 20683666 ~ 20683959 (-) False AMCG00018805
TU148763 lncRNA downstream 425216 20682954 ~ 20683354 (-) True G118720
TU148977 lncRNA upstream 458208 21567009 ~ 21567253 (-) True G118870
TU148992 lncRNA upstream 486193 21594994 ~ 21616493 (-) True G118881
TU149003 lncRNA upstream 572532 21681333 ~ 21681557 (-) True G118886
TU149006 lncRNA upstream 586182 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA upstream 586182 21694983 ~ 21702048 (-) False G118889
AMCG00018807 mRNA downstream 95879 20922373 ~ 21012691 (-) True AMCG00018807
AMCG00018808 mRNA downstream 303244 20776919 ~ 20805326 (-) True AMCG00018808
AMCG00018805 mRNA downstream 418648 20683686 ~ 20689922 (-) True AMCG00018805
AMCG00018797 mRNA downstream 446328 20645214 ~ 20662242 (-) True AMCG00018797
AMCG00018798 mRNA downstream 466694 20637710 ~ 20641876 (-) True AMCG00018798
AMCG00018810 mRNA upstream 33254 21142055 ~ 21146883 (-) True AMCG00018810
AMCG00018809 mRNA upstream 39731 21148532 ~ 21175765 (-) True AMCG00018809
AMCG00018811 mRNA upstream 68031 21176832 ~ 21180489 (-) True AMCG00018811
AMCG00018813 mRNA upstream 77580 21186381 ~ 21190099 (-) True AMCG00018813
AMCG00018812 mRNA upstream 84146 21192947 ~ 21228267 (-) True AMCG00018812
TU148773 other downstream 410743 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 502750 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 502750 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 617832 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 651047 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 971663 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 1695544 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3966597 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 4025970 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 4077406 25186207 ~ 25187408 (-) True G119545

Expression Profile