RNA id: TU148883



Basic Information


Item Value
RNA id TU148883
length 964
RNA type TUCP
GC content 0.33
exon number 2
gene id G118815
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21187956 ~ 21189246 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tatatatatatacacatacacacacacatacacatacatagcttatcattaaaatatacaccAACCTTGcaacaataaagaaatattaGATGCACAACATAGTACAGTCAGCtttgttttttgccttttttctgtaGCATTCTTTATACCTATAAAGCAATAAATACTAATTTACAGAACTTATATACAAGCTATATAGTAAGGTTAAGATAAAATATATGCTTAAAGGTGATGGCAaaagaaatgttttgtatatttatttatttgtttatttatatttataagcaCAGTAGCAAATTCTTCAAGTATTATGacaaaatatacattggttTGGTGAACTGTAAACCACTTACCacttgtgtgtgttggtgtgagCATTCTTCTTACATTCATTTATCTACAGCCACAGTGGCAGGGAAAATACCAGGCATGATTCATGCGCCATCcactgcagtgcagtataaGGTTGTAGAACATCTATTGGCAAATTTAACACTGCCACTAAACAACACAAGGTGCTCCAACAATTTCTGTTGTGAACCAAAACTGCAAacgattttttatttttgtacacatACATGGCATTCAGCTTTTTCAATGTTGACATTTTACCAAACGCAATTTGAGCCAAATTGGTGCATTTCTTGTTGCAGTTTTTGATTTGGCTGTTTGATATTGTGGCGTTTAGGGATAAATTTGCCCTGCTCTCTgtgacacacacaagcacacacactccACCACTTTCATATTTACCTCTATCTCAATGTAAAAAACACAGCCTTTTTACATCCAAACTCACAACGCTACACAATTATTCCACCCAGATTTGGCTGCTGTttactgaacaacaacaaaaaaacaaaacaaaacaaaacaaaaaagatgcactCCATAGAAATACAAAGGTActtgtaaaaaaagaaaccaaaaaaaacctgCAATTTACACATTTAGATAAATTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU148823 lncRNA upstream 256552 20922368 ~ 20931404 (+) True G118771
TU148752 lncRNA upstream 500312 20684865 ~ 20687644 (+) False AMCG00018800
TU148666 lncRNA upstream 567409 20607648 ~ 20620547 (+) True G118644
TU148668 lncRNA upstream 581859 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 587600 20599791 ~ 20600356 (+) True G118641
TU148961 lncRNA downstream 181664 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 492074 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 659169 21848415 ~ 21853057 (+) False AMCG00018820
TU149148 lncRNA downstream 1358026 22547272 ~ 22547691 (+) True G118999
TU149154 lncRNA downstream 1368967 22558213 ~ 22558419 (+) True G119005
AMCG00018806 mRNA upstream 275879 20896914 ~ 20912077 (+) True AMCG00018806
AMCG00018802 mRNA upstream 415370 20723610 ~ 20772586 (+) True AMCG00018802
AMCG00018801 mRNA upstream 464842 20706497 ~ 20723114 (+) True AMCG00018801
AMCG00018803 mRNA upstream 482003 20698222 ~ 20705953 (+) True AMCG00018803
AMCG00018804 mRNA upstream 490064 20695682 ~ 20697892 (+) True AMCG00018804
AMCG00018823 mRNA downstream 502065 21691311 ~ 21692108 (+) True AMCG00018823
AMCG00018821 mRNA downstream 526604 21715850 ~ 21743739 (+) True AMCG00018821
AMCG00018820 mRNA downstream 659124 21848370 ~ 21897700 (+) True AMCG00018820
AMCG00018826 mRNA downstream 840954 22030200 ~ 22036605 (+) True AMCG00018826
AMCG00018825 mRNA downstream 858056 22047302 ~ 22074621 (+) True AMCG00018825
TU148789 other upstream 431736 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 584641 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 593817 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 594940 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 673465 20514160 ~ 20514491 (+) True G118623
TU149795 other downstream 4044836 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4295051 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5271374 26460620 ~ 26461227 (+) True G119762

Expression Profile