RNA id: TU148992


Basic Information

Item Value
RNA id TU148992
length 3044
lncRNA type read_through
GC content 0.37
exon number 7
gene id G118881
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21594994 ~ 21616493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTCTCCTCTTGTGATCTGCATTGTTTCTGTCACATCAGCCCTGGACAGCTATGGCAAAGAAGGAAACTGCTGGCTCTCCCTTCAGAATGGAGCGATATGGGCTTTTGTTGCTCCAGCACTTTTTGTAATTGTGGTAAACATCGGCATCCTGATAGCTGTAACGAGAATCATCTCCAGAATTAGTGCTGATAACTACAAGGTACACGGAGATGCCAACGCAGTCAAGCTGACGGCCAAAGCTGTTGCTGTCCTCTTGCCAATCCTGGGGATCTCGTGGATTTTCGGGGTCCTGGCTGTCAATGAACATGCGCTTCCATTCCAGTACATGTTTGCTATATTTAATTCGTTACAGggCTTCTTCATTTTCCTCTTCCACTGCCTTCTTAACTCCGAGGTCCGAGCTGcctttaaacacaaaaccaagGTTTGGTCTCTTACCAGTAGCTCCATCCGTAACATCAACGTGAAACCTTTCAACTCTGACATTatgAATGGAAACAGGCCTGGAACGACACcaacaaaaatgaacacatgGGACAAGAGTACAAACTCAGCAAACCGCATTGACTTATCAGCAGTGTAGTACTGCCTGGACTGCATCCATTGACTTTTGGAGAAAACcccaaaaaataagtatatataaatatatgcatatgaaAAGAGAAAGTTTATTCGTGTAAATAGAGAAGTAACACTGGCTAATTGAAATAGGAGAGCACATTGAAAACAGACTTTCATCTTAACCACAAACCAGTCTAACTGGGTCATACTGTATCTGCCCTCAATGGTCTTATGAAAAGCCCATCACTATTATTTTTGGTTCACATTATCTGGTTGCTTGAAAGTAACCTTTTAATGACCAGAAGATTTCATATgagaagaaagaaatatatacattttttcaccTCCCCTCCAAAAAAGCAACCCAGCCTTCAAGcttagatatatttttaaataaataactgcccTTTATAGTGACTTGCAGTTTAAAGAGTGAAATTATGTAATatgatagaaaataataaaattcaaAATCGGCCAGTAGATCATGATCGGCAGGTTGGCGGCCGAAACTCTGTGAAAGAATGAAAAGGTGTAAATCACAGCAAAGTTACAATCCCCCTGAAGAAATCGACCAGTTCTCTTCCATTGTCAGGTTGTTGCGGataatcttttatttaatttgaattctttTCAGCTTTACACAATCAAGGCAGACGTCCAACAGAGAGCAAGTATAATTTCTAATAGAAAAAGtttttctaatattttctttttagaaatacagaatgtttgctaatgtttttaatgcCAAAAATGTCTTGTCACCGGGTCCGATCTGAGAGCCCCTATGTGACAAGTAAGGcactgtacttttttttctaatttaaaaagctgtatATTTCTTTTTACTATTCCCCTTTGACTATGTGCCAATTTTAGCTTTTTGTATTGTTCTCTTAATCAAAATCAGACTCTGATGAGGAATGTATGGAAGATCGGGGGCTCTGTTTTAGAGCGATGGTAATTCAGACCACACTGGAACACTGAGATTCAGtcaaaacgttgacccaccTGCAAATTATAAAACCCAAAGCTAGGAAAGTTTTCTTTTGGGTTTCTACAAAAAAACCtctggcaaaaaataaatacattaaaaaaaatcttccccCAAGAACCTGGTCTGGAATTAAGTGACAGTGTGTTGAAATTGTGATTGTACCTGGGCTAAAATCAGATTTCACTGGGGAAGGGAGAGGACGATTGTTTCATAATCAGTCGCTCTTGATACCACTGTAAATTTGTATATTAGTTGATCTTCTTTTGCGTATAATTGACAGTCTTACCACACGTCCTGTTTCTGTGTAGATATGCAGTGGAAGTCTCCTATGCTGGCAGAAGTCACAGTATAAAGACTTTCTGTTTGAGTTTCCGATTAAACATTGAATATTAAACCTATTAGTGCTTGATCACTTGAAATGTGTATCATTATGCTGTAATTAAGCTTGCATAAGGTTATAGTAAATGACAATATTGTAGTGCTTCATCAATGGGAAATTAAGGGGTATAACaaaatttaagttattttactATTCAGCGTTAATTTGGTATAAAAGGAGTCTGATTGAGTGTTACATAAGTCTGTCATTGCTTTCTCTTGCGAGTGACTCGATAATGTAGCACACGTGTCTTGCGTGGATGTTCAACTTACAATCATTTTCTGTTGCCTGTTATGAAAGGTGCTGTTGCGGTGTTGCGGAATCATGTGACTTTATAAACCATGCATAACTAGTTCATGAAAGAGCAGGTCGCAAGATAGCTAATAAAAAGTAAGACTAATCATTGTGTCTGCAGACGAGTTATGTCAGCAATAATCTATGAACAAGTTGATAGGGGAGTTAATTGGATCCTTTCTCCCTTCGTCCCACTAGTCACACTGGTGGTTGAGATACAGGGGTGTGAGGTCATACATTTGATTCAGAAagatatacattattaaaataaaaacctttccCCAAAGAATATATgtgaataatattataatagtaTACATTCTATACTTGCAAGGGCTTCAAGCAATAATCATAGTTATCATGTTTCGCGTGACAAATGGTTTCACACTATTCTGTAACACCCTTAAAGTAACTTTCATAATGGAGGTGGATTGTTATctattttgtttatgtgtgtcgCTGTTTGATTTTGGGCTCAGACTTGGGCCCaacattttgcctttttttaaagatgaaactGTATAAACATAACTGTGAGCAGAAAAAGGTTTGTGTGCCTTttgaataaaattgaaattattttatcaaCTGTAGCTACACTGTTTTCTATAAATGGTGTTTACTGTATTATGTCTCGGGAGTATCTTTTGTTTGATCACAATTTCAGTATTAGAAACAGTTTCTGTCCAATTTTCTTGGCTGCCTTTTTTATGTCTTAATTTAAGATTCATGTGCTGTGTAGACTTGATCTGAATTGTCATCTCTTGAATAAGGAGAAAAAGTTCACAAAGGGGAATTTAATAAAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148977 lncRNA downstream 27741 21567009 ~ 21567253 (-) True G118870
TU148874 lncRNA downstream 486193 21108570 ~ 21108801 (-) True G118808
TU148783 lncRNA downstream 871213 20723580 ~ 20723781 (-) True G118735
TU148774 lncRNA downstream 897167 20696834 ~ 20697827 (-) True G118727
TU148771 lncRNA downstream 898806 20695669 ~ 20696188 (-) True G118726
TU149003 lncRNA upstream 64840 21681333 ~ 21681557 (-) True G118886
TU149006 lncRNA upstream 78490 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA upstream 78490 21694983 ~ 21702048 (-) False G118889
TU149008 lncRNA upstream 78490 21694983 ~ 21702048 (-) True G118889
TU149009 lncRNA upstream 78490 21694983 ~ 21702048 (-) False G118889
AMCG00018815 mRNA downstream 172342 21401894 ~ 21422652 (-) True AMCG00018815
AMCG00018816 mRNA downstream 328584 21239907 ~ 21266410 (-) True AMCG00018816
AMCG00018812 mRNA downstream 366727 21192947 ~ 21228267 (-) True AMCG00018812
AMCG00018813 mRNA downstream 404895 21186381 ~ 21190099 (-) True AMCG00018813
AMCG00018811 mRNA downstream 414505 21176832 ~ 21180489 (-) True AMCG00018811
AMCG00018817 mRNA upstream 32341 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018818 mRNA upstream 55781 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018822 mRNA upstream 281313 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018824 mRNA upstream 336741 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018830 mRNA upstream 560465 22176958 ~ 22223700 (-) True AMCG00018830
TU148773 other downstream 897167 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 989174 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 989174 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1104256 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 1137471 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 463971 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 1187852 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3458905 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3518278 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3569714 25186207 ~ 25187408 (-) True G119545

Expression Profile