RNA id: TU149009


Basic Information

Item Value
RNA id TU149009
length 445
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G118889
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 21694983 ~ 21702048 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNTCTCACCTATTGGTTTGGCTTCTCCACTCTACTAAAACTGCTGTTACTGAACCTCTGAACATCAGATTTAAACACTAGTCAAAGAAGGTGGCTTTGAACATTATCCACTAAGGAACTCATCTTCATTCTGAACCCTGGGAAAGACTCTCTCTTCAGGTTCTGCTGGACTGACATTGACCTGGAGGCGCCTGCCTATGTGTCACCTGGGTTTTCAGCCCTGGTTTACCCCCTGCCAGGGCTGTCTTGGTCAAGGTGCTTCCAGGCCACAGGGCCCATCCACTATCGGTACCAGCGGCCTACGGGTTCAGGGACAGAAGGGAGCTGAGCCACATGCAGAGCCCTccttatttcatttaatttgaacaatgTAGACTGTGCcagtattaaaatactgtatttcatgattcagtgcatttattaaatacaaatatcacacCTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149003 lncRNA downstream 13426 21681333 ~ 21681557 (-) True G118886
TU148992 lncRNA downstream 78490 21594994 ~ 21616493 (-) True G118881
TU148977 lncRNA downstream 127730 21567009 ~ 21567253 (-) True G118870
TU148874 lncRNA downstream 586182 21108570 ~ 21108801 (-) True G118808
TU148783 lncRNA downstream 971202 20723580 ~ 20723781 (-) True G118735
TU149015 lncRNA upstream 1254 21703302 ~ 21718803 (-) True G118892
TU149088 lncRNA upstream 449306 22151354 ~ 22153714 (-) True G118947
TU149209 lncRNA upstream 925497 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 961785 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 964881 22666929 ~ 22667210 (-) True G119072
AMCG00018818 mRNA downstream 19787 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018817 mRNA downstream 28299 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018814 mRNA downstream 71432 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018819 mRNA downstream 94311 21597469 ~ 21600672 (-) True AMCG00018819
AMCG00018815 mRNA downstream 272331 21401894 ~ 21422652 (-) True AMCG00018815
AMCG00018822 mRNA upstream 195758 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018824 mRNA upstream 251186 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018830 mRNA upstream 474910 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018831 mRNA upstream 589933 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018835 mRNA upstream 721358 22423406 ~ 22438354 (-) True AMCG00018835
TU148773 other downstream 997156 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1089163 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1089163 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1204245 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 1237460 20444497 ~ 20457523 (-) False AMCG00018788
TU149076 other upstream 378416 22080464 ~ 22113695 (-) True G118936
TU149337 other upstream 1102297 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 3373350 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3432723 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3484159 25186207 ~ 25187408 (-) True G119545

Expression Profile