RNA id: TU149076



Basic Information


Item Value
RNA id TU149076
length 2532
RNA type TUCP
GC content 0.41
exon number 11
gene id G118936
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22080464 ~ 22113695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTGCTGACGGACAAGATGTAAAAGTGTAGATTCAGAACCAAACCAGGTGATCTTTGCTCTTGTCATTTATCGATCAAGGAGCTGCGCAACTGGTTTTAATATCGGTTCGGTAAGAGGGGCGTATTTTTAATACTTGGATTATCGATATGAAAGTACTCTTTCTGGCTTGTCTCAGTCCAAAAACCGGTAATTGTACAACCGCAGAAAGAATCAGAGAGCACATTGAAGCAGCAGGTCACGCCTGTGTTCTTCGAGATGCGGCCGATTTCAAGTGTCCAGCTGAGGTGGCTGTGCTGGAGGCGAGGGAGGCGTGCTTCCAGGGGGCACTGGCCATTCACCTTTATAAAGCGGGCAGACTGCTGCTAGATACCCAGACTCCTTTCGGCGTTGTCTTTGGGGGGACAGACATTAATGAAGATGTGAGAGATGAAACTAAGCGAGCAGTCATGGGGAAGGTGCTGAAGAAAGCAAGGTTTGCTGTGGCATTCTCCCAAAAACTGAAAGAGCAGGCTGAAGCCTACTGgGGATTGAGACTGAAGCTACAGAAAACTTAAACTGGCGAGACTTTCTGCGAAGCACAGGTGTGAGCTGCAAGAATGTAGAAGATCTGCACGTTTTTCTCTTGGTGTGTGGACTGAGACGAGTGAAAGACCCTCTGTATCTGGTCGATGCATTTTCAGAATGGCATATAGAGGACCCATCGGTAATCCTGATCATCATTGGTCCAGAGATCGATCCTCTGTTTACAGGAGAAGTGGAAGCGAATGTTAAAAGAGCAAAAGGAGTATTCCTGGCTTCTGAGAGAAGACAGCAGGAGCTCCATGCAGCCATGAGGAGATCCTTCGCCTTGGTCAACAGTTCTGTCTCTGAAGGGATGTCAGCCGCCATTCTGGAGGCGATGGACTTGGAGCTGCCGGTCGTGGCGAGGGACATCCCAGGGAACGCGGAAATCGTTAAACACGAAGACACGGGACTGCTCTTTTCAAACCCACAGGAGTTTGTCGAACTGTCCAAGAGATTGCTGGTCAATCCAGCATTGCGTGAGAAGCTGGTGTCAAACGGGAGGAGGTACGTGAAGGAGCTGCACTGTAAAGGTAGGGAGAGACTCACCTACCACCAGCTGCTCCAACACCTACACTGACACCCGGCGCAGCTTCCCAGAGACCCACCTGGACTCGTCCCATCCCACACGGAGGCACAAGAGCCAAGAGCAACCAGGGCCACGCCGGAACGGGAAATTAAAATACCAGCAAAACAACAGATTGTTAGGTTTTCTATTGTACGTGATGTTtttactgaaaagaaaaaaaaacattttaaggatcattttactatttaaatgtttttgagttgttgttgttgttgtttttgttatccACAGCAGGTTTCTATTAAACCTTAAACCGTTCAGAGATTTGAAAGTTAATTGTATTGCTGCTGGagtcagattgttttgttttgcacttcagggaaATGCAGTGTTTCACTTGACTAGGCCGGGAATGAACGCTGTTGCAACAAGACCTAACCTTTTGCTGTATTCTGaagacaaaatatatgtatatagatttaCAAAAAATGGTTACAAGCAGGCGGTTATTTGAAAGGCAATGATGAGTGAAATTGTAAAGCAAGTCACTGAAGTTAAAATTTGTTCCCTTTTTCATAATCTTtcgtagttttttttttctttttctttgaaagtCACGTGGCTGGCATTgtgaagtttaaaaatatgttcgGGAAATGCTGCTAAGGCAGTGCTTGCTTAAAATCTGGTATTTCAACTGTATCTTTAAAttgttgaaatgtaattttctacTTTATATTTAAGATAAATACTCGGTATTTAGATTAATACTCGGTGTACACAGAGTTTAGCATCATGGTGGTAATGTTTTTTGTCctgaatatacatttatttttggtacaCAGGTATTTTCATACAACATGCTTTCTGTAATGAAGTAGATTTGTTAGCTGTTATGTTTGGGtttatttaaatggtatttAACAGAAttgcaaagtacagaaaatatCTGTAATACCAGTGGTATTAAATGATAATCTCTCAGGTTCAATCAAGTTCATTTTATATCTGAATGATCTCACTTTCATTTGACctgtcatgtgtttgtttttgttgtattattatttattttgatatgcaCCATATGATTTCTTTAGAAAAACAGTGCGATGTTTCTGGATTCACTTGTTTAATTTAGACCGATGATTAAAAGCTTTCGTCTGTCATTATTTGTAATTCTGGcagttggagagagagagaatcgaaaaggaaaatcaaacagCAGCAGTGTATCCCAGAAAGACCTATGCACTGCAGACGCCAGCTCAAAGAATTACAACATTTTCATCCGTCTTACAAGTAGTAATACTAGCTATATGTAGTGCTATTGCTGAACAAGCACAAAGAATGCTTTCTGAAAGCCAGATGTCTTATTGCTGATTAAGACCaaacctttaaaaaacacacaattcagTGACATGTTATAATAGTTATATCAATTg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149015 lncRNA downstream 361661 21703302 ~ 21718803 (-) True G118892
TU149006 lncRNA downstream 378416 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA downstream 378416 21694983 ~ 21702048 (-) False G118889
TU149008 lncRNA downstream 378416 21694983 ~ 21702048 (-) True G118889
TU149009 lncRNA downstream 378416 21694983 ~ 21702048 (-) False G118889
TU149088 lncRNA upstream 37659 22151354 ~ 22153714 (-) True G118947
TU149209 lncRNA upstream 513850 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 550138 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 553234 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 648665 22762360 ~ 22766026 (-) True G119128
AMCG00018824 mRNA downstream 125516 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018822 mRNA downstream 170975 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018818 mRNA downstream 405268 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018817 mRNA downstream 413780 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018814 mRNA downstream 456913 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018830 mRNA upstream 63263 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018831 mRNA upstream 178286 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018835 mRNA upstream 309711 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018840 mRNA upstream 367444 22481139 ~ 22487712 (-) True AMCG00018840
AMCG00018839 mRNA upstream 384324 22498019 ~ 22537319 (-) True AMCG00018839
TU148773 other downstream 1382637 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1474644 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1474644 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1589726 20490211 ~ 20490738 (-) False AMCG00018790
TU148710 other downstream 1622941 20444497 ~ 20457523 (-) False AMCG00018788
TU149337 other upstream 690650 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2961703 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 3021076 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3072512 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4699785 26813480 ~ 26814073 (-) True G119827

Expression Profile