RNA id: TU149088


Basic Information

Item Value
RNA id TU149088
length 2317
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G118947
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22151354 ~ 22153714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatttacacttatgcagaatttttatttatatttcttgctctaaatgttatgttaaatttaaaatgaaatacttaatttcaataaatgaacacttcatacatttaatattttttggggggctggggggttgatggaaataaaaaatgtgtttttcaggatAAGAACTCAAACATAAAAGTACATAACCTAAGGCTAATTACCTTTAGAAAATCATATTCAACCTGCAGAATACACCCTCTGCTGGTACAGAGGCCACATTAAAGCCTTGTCCTGCAGCTAGTTTGAATCAGCTTTGGCTTGTGACGAAACACTTCCACATACTTTCTtagcattgtattattttaaaatgcaagaaggaacagaaaacaaatgaacaaactataaataaataattgcaatgtggcattaagtacattattttattaacaaaagaaaagagaatgaaaaactGAGACAACTCTTGCATTTcttcatattatattaaaatggtaatgaAATATGAAAGAGCCTTTCAGAAGTCTACATCCTTGTCAAAACcctacattttcacaaaaaaataatgcaaatacataTCTGATACAAAGACAGAAATGCAAGCTTGTTGGTTAGTGTAAGAACCATGGTTTTAACAAATCAagcacaaccacaacaacaacaacaacaaagactaTTTCATATGAAATATGCAATGAAGTATTTAACAGTTCAGCTAAGGATAATCCACTATAAATACTGacaaattaggaaaataaaaaaaataaaaagtcttcagaaaaaataatattgtaaaatgtaaatcaagACCACCTTGCTTGAAGATACCCCAGATAAAAAAAGTGGTTCACAAGTATGCagcaaattgcattttaaaatagaaaagtcATCTACCAATCCAAATCAActtgtaaatatgtaaacattttaatggcaAATAAAGTCTAATGATCACCAACCTGTAATGCACTGTAATTGACATTCAATAATGAATTTTCACTTTTGCAAGTCTGCTCTACAGAACGATCACTTTCCAAAGTTTGCTTTAGTAATGTGGTTTTAACACACTTGTCAGTGCAagtcattaataatataatttgttaaaattcAATGACTTAAGACCTGCAAGAAGCCAattaatttgcataatcataatttaatttgctcATGGGGCACATAatctgataaatatatatatatatatatatatatataggaaggATCTGAATTTATTGATGTCTTCACTGGTTTAAGTATTTATGGAGTGCTTTAAACAATAGACTTTCAGGTTTAAGCTTAGCCCCCCTGGACAGTATTCACACAATGTAAGAGTCATGTTAAGGGAAGGCCAGAGACTCCAGTCTGAGAAAGTgatttgtcattatttaaaCTGAGTGTgagcaataaacacacaaacacaaaaataagaaatgccCACAGCTTTGgagttcagattttttttttttttttttttttttttttaaaggcagttGATGGTGCCCATACAGATTTAAAATCTTTGCTTCTTTGCATATACCAATAGTAGAAATCAATATAACAATACAATCAAAACACCCAGCAAAACAGAGGCAAAGGCACATGTAACAGATACAATTAGTAAAGTTTTTAAATCCATCTTAATGCAGAGTACAGAATACAACAGTTCCATGATCTACATATGAGCCATTAATAAgTTCATTGTGAAGAATGTCTTTCACAATGAACAACATACTTATTATAAGGCTGCAGGTACACGTTGTAAACCTTAATGTCTCAGAGGATgtgctaaatgtatttttagcttCACATCAGTAACTTGCATGTGAATGGCAACTCAACGTATTTTTAAAGAagctaaaaaaagaagaaaaaagaatacCACCAAACAGAAGCCATTGTTGTGGAATTCCTTAAAGCTTCTGATTTAagcttgtgttatttaaatCGAGCAACCAATAAAGTGCACATTAAAATTCACATAATGAAAGCAAACCAATTACCTGCATGTTAAAAGGAACCTCCCCTtcactccacacacacaatcatgaaagaaaatggttacaaatacaatgtgtaaaatTTGTAATGCTAATAAACCAGGGCGAGGCCGAGGGGGCGGCACTTTTAGCATTCCAGGACAGCTACAAACGATTCAGCTCATTACTACACGGTCACGAAGATGCAGCATTTTGCCGTTGTACGCCTGATCGGTTCTTCTGCTTGTCATACTTGACTGACACAATCAAGAAGAGCAGCAGGGTTACTCCCTGGATCCCCGCTAGCAAGAAAAAGTAGTAATTCAAAGAACAACCATTGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149015 lncRNA downstream 432551 21703302 ~ 21718803 (-) True G118892
TU149006 lncRNA downstream 449306 21694983 ~ 21702048 (-) False G118889
TU149007 lncRNA downstream 449306 21694983 ~ 21702048 (-) False G118889
TU149008 lncRNA downstream 449306 21694983 ~ 21702048 (-) True G118889
TU149009 lncRNA downstream 449306 21694983 ~ 21702048 (-) False G118889
TU149209 lncRNA upstream 473831 22627545 ~ 22630125 (-) True G119048
TU149241 lncRNA upstream 510119 22663833 ~ 22664099 (-) True G119070
TU149243 lncRNA upstream 513215 22666929 ~ 22667210 (-) True G119072
TU149317 lncRNA upstream 608646 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 681045 22834759 ~ 22857679 (-) True G119129
AMCG00018824 mRNA downstream 196406 21953234 ~ 21954948 (-) True AMCG00018824
AMCG00018822 mRNA downstream 241865 21897806 ~ 21909489 (-) True AMCG00018822
AMCG00018818 mRNA downstream 476158 21672274 ~ 21675196 (-) True AMCG00018818
AMCG00018817 mRNA downstream 484670 21648834 ~ 21666684 (-) True AMCG00018817
AMCG00018814 mRNA downstream 527803 21611950 ~ 21623551 (-) True AMCG00018814
AMCG00018830 mRNA upstream 23244 22176958 ~ 22223700 (-) True AMCG00018830
AMCG00018831 mRNA upstream 138267 22291981 ~ 22292847 (-) True AMCG00018831
AMCG00018835 mRNA upstream 269692 22423406 ~ 22438354 (-) True AMCG00018835
AMCG00018840 mRNA upstream 327425 22481139 ~ 22487712 (-) True AMCG00018840
AMCG00018839 mRNA upstream 344305 22498019 ~ 22537319 (-) True AMCG00018839
TU149076 other downstream 37659 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 1453527 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 1545534 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 1545534 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 1660616 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 650631 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2921684 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2981057 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 3032493 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4659766 26813480 ~ 26814073 (-) True G119827

Expression Profile