RNA id: TU149155



Basic Information


Item Value
RNA id TU149155
length 219
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G119006
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22561062 ~ 22561280 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CATCAGCCAGggcctgctcctgctcctgctggcGCTCCTGccgctcctgctgctgctgctgctgctgacggGAGCTTTTACGTTTCACGTAATCGTGGTCAACCGGTGTGGCTGTGTAAGGTGGGGATGTCAGACCTGGCCCagtggaggggagggaggtCCCGGGACCCTGCGCCGTGCCCATGGAGGAGTGTGAGTCCTCATCAATCACAGACGGAG

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU149154 lncRNA upstream 2643 22558213 ~ 22558419 (+) True G119005
TU149148 lncRNA upstream 13371 22547272 ~ 22547691 (+) True G118999
TU149036 lncRNA upstream 708005 21848415 ~ 21853057 (+) False AMCG00018820
TU149002 lncRNA upstream 879339 21681320 ~ 21681723 (+) True G118885
TU148961 lncRNA upstream 1138292 21370910 ~ 21422770 (+) True G118863
TU149156 lncRNA downstream 1272 22562552 ~ 22562810 (+) True G119007
TU149157 lncRNA downstream 3090 22564370 ~ 22564707 (+) True G119008
TU149158 lncRNA downstream 4078 22565358 ~ 22565611 (+) True G119009
TU149159 lncRNA downstream 6486 22567766 ~ 22567980 (+) True G119010
TU149162 lncRNA downstream 14179 22575459 ~ 22575690 (+) True G119013
AMCG00018832 mRNA upstream 100645 22455239 ~ 22460417 (+) True AMCG00018832
AMCG00018833 mRNA upstream 111733 22440803 ~ 22449329 (+) True AMCG00018833
AMCG00018834 mRNA upstream 138248 22401501 ~ 22422814 (+) True AMCG00018834
AMCG00018827 mRNA upstream 422769 22115610 ~ 22138293 (+) True AMCG00018827
AMCG00018829 mRNA upstream 469444 22091346 ~ 22091618 (+) True AMCG00018829
AMCG00018836 mRNA downstream 43071 22604351 ~ 22627498 (+) True AMCG00018836
AMCG00018838 mRNA downstream 69265 22630545 ~ 22636051 (+) True AMCG00018838
AMCG00018837 mRNA downstream 89859 22651139 ~ 22659793 (+) True AMCG00018837
AMCG00018847 mRNA downstream 123597 22684877 ~ 22692816 (+) True AMCG00018847
AMCG00018845 mRNA downstream 150412 22711692 ~ 22719425 (+) True AMCG00018845
TU148883 other upstream 1371816 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1804842 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 1957747 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 1966923 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 1968046 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 2672802 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 2923017 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 3899340 26460620 ~ 26461227 (+) True G119762

Expression Profile


TU149155 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
End of interactive chart.

TU149155 Expression in each Bioproject

Bar chart with 2 bars.
TU149155 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.