RNA id: TU149156



Basic Information


Item Value
RNA id TU149156
length 259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G119007
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22562552 ~ 22562810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTAGCAATGTCGCTCTTAGACACTCTTGCTGTCCTCTGTGTGTCAGACCCCACCAATGGCAATGTCTAgtctaaaaaataaaccaagaaaACGTTGGTCAAGCACAAGAACTGGAGacattattctaaaataatttgcttgtttgtctgtgtgctttttTAAGAGCTCTACTTTGTATCACAACATTTCCCCCTCAAATTCTCACAAAGTTCACACTGAAGTGTCAGAAGGTAATGACATACATAGAATGCAATCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149155 lncRNA upstream 1272 22561062 ~ 22561280 (+) True G119006
TU149154 lncRNA upstream 4133 22558213 ~ 22558419 (+) True G119005
TU149148 lncRNA upstream 14861 22547272 ~ 22547691 (+) True G118999
TU149036 lncRNA upstream 709495 21848415 ~ 21853057 (+) False AMCG00018820
TU149002 lncRNA upstream 880829 21681320 ~ 21681723 (+) True G118885
TU149157 lncRNA downstream 1560 22564370 ~ 22564707 (+) True G119008
TU149158 lncRNA downstream 2548 22565358 ~ 22565611 (+) True G119009
TU149159 lncRNA downstream 4956 22567766 ~ 22567980 (+) True G119010
TU149162 lncRNA downstream 12649 22575459 ~ 22575690 (+) True G119013
TU149163 lncRNA downstream 13912 22576722 ~ 22576960 (+) True G119014
AMCG00018832 mRNA upstream 102135 22455239 ~ 22460417 (+) True AMCG00018832
AMCG00018833 mRNA upstream 113223 22440803 ~ 22449329 (+) True AMCG00018833
AMCG00018834 mRNA upstream 139738 22401501 ~ 22422814 (+) True AMCG00018834
AMCG00018827 mRNA upstream 424259 22115610 ~ 22138293 (+) True AMCG00018827
AMCG00018829 mRNA upstream 470934 22091346 ~ 22091618 (+) True AMCG00018829
AMCG00018836 mRNA downstream 41541 22604351 ~ 22627498 (+) True AMCG00018836
AMCG00018838 mRNA downstream 67735 22630545 ~ 22636051 (+) True AMCG00018838
AMCG00018837 mRNA downstream 88329 22651139 ~ 22659793 (+) True AMCG00018837
AMCG00018847 mRNA downstream 122067 22684877 ~ 22692816 (+) True AMCG00018847
AMCG00018845 mRNA downstream 148882 22711692 ~ 22719425 (+) True AMCG00018845
TU148883 other upstream 1373306 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1806332 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 1959237 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 1968413 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 1969536 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 2671272 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 2921487 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 3897810 26460620 ~ 26461227 (+) True G119762

Expression Profile