RNA id: TU149158



Basic Information


Item Value
RNA id TU149158
length 254
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G119009
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22565358 ~ 22565611 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACCTCCGAGGGCAGCTCAGTCTTGAACTGCTTGAGCTGCCGTGATGCGAAGGAGTGCAGCGCGTAGGACATAGTGCCGTACTCGATCCACAGAGACAGATTGGAGCCATCGATCTCCAGAGCGCGCTTGAAGCAGTTGAGCACTGACATGGAGTGTTTCCAGATGGGACCGTCACTCTTCAGCTcattggagttcagcttgtccTGGATGCGGCTGGCTCTGGCTAGAGCCATGCCGGCCCAGGAATCAAACCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149157 lncRNA upstream 651 22564370 ~ 22564707 (+) True G119008
TU149156 lncRNA upstream 2548 22562552 ~ 22562810 (+) True G119007
TU149155 lncRNA upstream 4078 22561062 ~ 22561280 (+) True G119006
TU149154 lncRNA upstream 6939 22558213 ~ 22558419 (+) True G119005
TU149148 lncRNA upstream 17667 22547272 ~ 22547691 (+) True G118999
TU149159 lncRNA downstream 2155 22567766 ~ 22567980 (+) True G119010
TU149162 lncRNA downstream 9848 22575459 ~ 22575690 (+) True G119013
TU149163 lncRNA downstream 11111 22576722 ~ 22576960 (+) True G119014
TU149164 lncRNA downstream 11890 22577501 ~ 22577713 (+) True G119015
TU149165 lncRNA downstream 13440 22579051 ~ 22579336 (+) True G119016
AMCG00018832 mRNA upstream 104941 22455239 ~ 22460417 (+) True AMCG00018832
AMCG00018833 mRNA upstream 116029 22440803 ~ 22449329 (+) True AMCG00018833
AMCG00018834 mRNA upstream 142544 22401501 ~ 22422814 (+) True AMCG00018834
AMCG00018827 mRNA upstream 427065 22115610 ~ 22138293 (+) True AMCG00018827
AMCG00018829 mRNA upstream 473740 22091346 ~ 22091618 (+) True AMCG00018829
AMCG00018836 mRNA downstream 38740 22604351 ~ 22627498 (+) True AMCG00018836
AMCG00018838 mRNA downstream 64934 22630545 ~ 22636051 (+) True AMCG00018838
AMCG00018837 mRNA downstream 85528 22651139 ~ 22659793 (+) True AMCG00018837
AMCG00018847 mRNA downstream 119266 22684877 ~ 22692816 (+) True AMCG00018847
AMCG00018845 mRNA downstream 146081 22711692 ~ 22719425 (+) True AMCG00018845
TU148883 other upstream 1376112 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 1809138 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 1962043 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 1971219 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 1972342 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 2668471 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 2918686 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 3895009 26460620 ~ 26461227 (+) True G119762

Expression Profile