RNA id: TU149243


Basic Information

Item Value
RNA id TU149243
length 282
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G119072
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22666929 ~ 22667210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttcccaattgtttacacacGTTTGCTGAATCTTTGGCTCATTTTCCCAAAActataaacacaaatcaaaaccacaaacacaaaatgcaaaagtctACAAATCTCtaacaaaagcaaacactgcattcaaaactgtttttacaTCAAAATGACACACACGTCATATGAATAGATCTGTCTACCAACCAACAACACACTGATGtgctcaacacaaaacaattctaTGAATATCCCATCAGTAGATTTAtgccttttgcattttcagtgttaCACTGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149241 lncRNA downstream 2830 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 36804 22627545 ~ 22630125 (-) True G119048
TU149088 lncRNA downstream 513215 22151354 ~ 22153714 (-) True G118947
TU149015 lncRNA downstream 948126 21703302 ~ 21718803 (-) True G118892
TU149008 lncRNA downstream 964881 21694983 ~ 21702048 (-) True G118889
TU149317 lncRNA upstream 95150 22762360 ~ 22766026 (-) True G119128
TU149321 lncRNA upstream 167549 22834759 ~ 22857679 (-) True G119129
TU149380 lncRNA upstream 315656 22982866 ~ 22983566 (-) True G119180
TU149381 lncRNA upstream 316974 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 442391 23109601 ~ 23111520 (-) True G119235
AMCG00018844 mRNA downstream 21562 22637693 ~ 22645367 (-) True AMCG00018844
AMCG00018843 mRNA downstream 76605 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018842 mRNA downstream 80893 22584167 ~ 22586036 (-) True AMCG00018842
AMCG00018841 mRNA downstream 84090 22561021 ~ 22582839 (-) True AMCG00018841
AMCG00018839 mRNA downstream 129610 22498019 ~ 22537319 (-) True AMCG00018839
AMCG00018856 mRNA upstream 86757 22753967 ~ 22760428 (-) True AMCG00018856
AMCG00018861 mRNA upstream 100251 22767461 ~ 22768061 (-) True AMCG00018861
AMCG00018859 mRNA upstream 104226 22771436 ~ 22790973 (-) True AMCG00018859
AMCG00018860 mRNA upstream 142275 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018857 mRNA upstream 172322 22839532 ~ 22850722 (-) True AMCG00018857
TU149076 other downstream 553234 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 1969102 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2061109 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 2061109 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 2176191 20490211 ~ 20490738 (-) False AMCG00018790
TU149337 other upstream 137135 22804345 ~ 22806338 (-) True G119144
TU149755 other upstream 2408188 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2467561 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2518997 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4146270 26813480 ~ 26814073 (-) True G119827

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU251633 False 705 lncRNA 0.39 5 NC_048567.1 7512051 ~ 7513038 (+)