RNA id: TU149321


Basic Information

Item Value
RNA id TU149321
length 1131
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G119129
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22834759 ~ 22857679 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGCTTTTATTACAAAGAAAGGTCTTCACAGCAATCTTTACAAAAGCAATTGTAGGCTTGTGATAGATTGAAATGATAAAAGTTTATTAGCATATTTTGAGGGAATGAATCAGAGAAGAATGAAAcccattgaaatatatattattttttataggtGTTTCTCCTCTGTCCACTCTCTCCAAAAGTGAGATTGCTCCTATTGATCATCAGATTGCAAATACCGTACTTCATTCTATGTACCAAAAAGAGACCTGACCTCCTGGACTAAAAGCATTAACCTGAAAACACTACCCGCTGCATGGCCACATAGAAGAACCCAAGTATAAAAGCATGGGCAGACGCCGTGGGGCAAAAAGGGGCAACACTGTGCTTCAGTATTCTATACATATTGTATCTAgttgatcatttaaataaatttgcaGTTGCCTTCAGTTCCTGTGCTTCGTGTCAGTGTTTTACAAAAGCATTCAAATGATTATATCCTGGTGGAAACATTGCCATTTGTTGGGGTTGTGAACAAGGAAAGTAACATTTACAGTAGCGCTCAGGAGTGTATAAACTTTGACCAGGTGGTCCACTTTGGATTTTATAAACAGTGGCAGCATCTGGTTTTGAATCATTGGTCTCTAAAACCAACACATACCAACTTTTCTCAGAGTTTTGGTTATGGGGTCCCATATGTAGTTTGTGAATTTGCAACCTTAAAAAttgacaaaaaaggaaaagggaaatgAAATTAGAATAGGGGTTCTCCAAGGTATTAGCATTTTAATACAGTAGTCACAGTTTATATCTCAGTGCATGTTATAATAACtaagagagagagtggaaaaaaacctaaataaatgagTGTAATGGAGGAGTGAATTGAACTTCAGTTTCCAAATTCAGGCACAGCAGTTTAGCAGTCAGCGCTCCATGTCAAAAGGGAATTCTCCTGGACCCTTGAAGACAAGCCATCACTTTAAGGACGCGATCCACTTCCTGGATATTGGGGTCGGTTCTAATCAAAGGAAGACCTTTGATCCCCACTTACCAAGTCAAAGTCATCCacaaatttgtatttcttctctCTGTAGAAATTCCTTTTCTTCATACAGTACAAGACAATGCAATCACACAGCACCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149317 lncRNA downstream 68733 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 167549 22666929 ~ 22667210 (-) True G119072
TU149241 lncRNA downstream 170660 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 204634 22627545 ~ 22630125 (-) True G119048
TU149088 lncRNA downstream 681045 22151354 ~ 22153714 (-) True G118947
TU149380 lncRNA upstream 125187 22982866 ~ 22983566 (-) True G119180
TU149381 lncRNA upstream 126505 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 251922 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1661734 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1708467 24566146 ~ 24568299 (-) True G119384
AMCG00018860 mRNA downstream 13113 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018859 mRNA downstream 43786 22771436 ~ 22790973 (-) True AMCG00018859
AMCG00018861 mRNA downstream 66698 22767461 ~ 22768061 (-) True AMCG00018861
AMCG00018856 mRNA downstream 74331 22753967 ~ 22760428 (-) True AMCG00018856
AMCG00018844 mRNA downstream 189392 22637693 ~ 22645367 (-) True AMCG00018844
AMCG00018855 mRNA upstream 3412 22861091 ~ 22862779 (-) True AMCG00018855
AMCG00018858 mRNA upstream 13480 22871159 ~ 22875760 (-) True AMCG00018858
AMCG00018863 mRNA upstream 18982 22876661 ~ 22887044 (-) True AMCG00018863
AMCG00018862 mRNA upstream 41873 22899552 ~ 22927435 (-) True AMCG00018862
AMCG00018867 mRNA upstream 129546 22987225 ~ 22993237 (-) True AMCG00018867
TU149337 other downstream 28421 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 721064 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2136932 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2228939 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 2228939 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 2217719 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2277092 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2328528 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3955801 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4373194 27230873 ~ 27242574 (-) True G119893

Expression Profile