RNA id: TU149337


Basic Information

Item Value
RNA id TU149337
length 1811
RNA type TUCP
GC content 0.40
exon number 2
gene id G119144
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22804345 ~ 22806338 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACCAACTCTACCTGCATCATCTCCACAATGGCCACAAGGTCTGCCAGTGAGATCTGGTCACCAACAATGAAGGGTTTGTCCTGGAGGAACTTCTCTTCAAACAGCTGCAGAGAGGTTTCAAGGTCCTCCATGGCCGAGTCCATCTTCTCCTTGGGAATTGAATTGTCACTGAGCGTGGGAATTAACCTTGAACCAGAAGATTTTGGACCCATGTGGTCTGATTGTCGAGTGCTGCCATGCGAGGTACTCATTCACCCTGGCTCTCTTCCTTACATCTGCTGGGTACCAGTGGTCTGCAGTGTTGAACTTCTGTGCCAGGTATGCCAGGATCGCAGTGCTGGAGCATAGAGGAGAGAATTAAGTgcttcaatttcaattaaagatcAGTAGATGCAACTCAAAAGTTATGAGGGGAAattagggatttttttttttttaaggtttttctAGGTGCAAACTTTTGACTATTCTAAatcctaattaaattaaattaatttaaatgtaaccatttaCAGGTTAACACTTCTTTCTGACTTAATGCAATGCAAACTGCAAGAAACCATCTGAAGAAAACCATTTCCAGGCAATACCAAATCTTGTCGGCttagtttgttttgtacaatttaaaccaaatacatgtatattaggCTAATTAAAGTACACAAAGTCTCAGGGGGCAAATTAGCATTGCACTGTTCCCGGAGCTTATTGCAATCATTGATGACGATcaagaataaacattttgaaatgcattacaaacacaaagtaAAGTAAAGGTCTCTCAAAACTGGTTTTGATCACAATGCTACAAGAGTCCTGTGTGTTAATCTCATGTTAAAGATCTGACCAAAGCTTTCGGTATTCGAGTCATGATAGCCATCAGGTGTGGAGTTGCTACCAACAGCGGGCTGCACAAGAAAAGGTCTTCCACAACTCTAAAGCTTACAGACCTTTCAGCCAAAGTAAAGTCGTCATGTCTCAGGGCGGGAACCTTCCTCAGTAGATTGATCTTTCCGAAGTCCTCCTCATATTGCTGACCTGTGAAGGGATGTAGAGCACTTGTACCATTGCAGAATCCCACTGCCTAAACCTTTATTGCAATAGTGCAAGCATTCATGCTAAATGACAGTATTCTGCTTCAAGAGCACTATAGTGTAGTGTGCATATGTAGAACAGTACTCCTCATTCATTTAAAGACAAATTGTAATTGGCTCTGCCTGTGAAATGTTGAGAACATGAGGGCATCTGTAAAAACTTTCATGCGAAAGATCAAAAGAAAAAGCTACAGATATCCTAATTGTAAATAAACTTAAACAGTAAATTAAGCATTCAACATTGGTTAATTGATACTGTTGCAGTAGGTCGCGGCACGTTTGACACGTCATCAGTCATATATTACACTGGGCAAAGTGCAAGTAGCTGGTTCTTGAATAGTTCATCCTTAACAATACATCTATTGGCAAAAGTCTCCTGGTTATATCTGTTTAACTGCAATAAAAGTAGTGTACAATTCAGGTTAATACCACGTCGTTTCATTGCAGTTACGCTTGTCCTAATAACTGGAGCAGAAGCACTTCTTTACAAGCAAGCAAAACCACGGCAATTAAGATTGCTAGGGTGTGTTCCGAACCATTAATACacggttttaattttttctatGAATTATCATGAAACGCAGATTAAGTGAACGCACAAACCAACGGTCACTGCAGAGAAATGATTCAAGAGGTATCTGCTCAAGTTTCCCTACACAATTATGATACGTCTGTGCACATTCCTAAAGCCCACAGGGATCATGCAGGGATCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149317 lncRNA downstream 38319 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 137135 22666929 ~ 22667210 (-) True G119072
TU149241 lncRNA downstream 140246 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 174220 22627545 ~ 22630125 (-) True G119048
TU149088 lncRNA downstream 650631 22151354 ~ 22153714 (-) True G118947
TU149321 lncRNA upstream 28421 22834759 ~ 22857679 (-) True G119129
TU149380 lncRNA upstream 176528 22982866 ~ 22983566 (-) True G119180
TU149381 lncRNA upstream 177846 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 303263 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1713075 24519413 ~ 24608462 (-) True G119382
AMCG00018859 mRNA downstream 13372 22771436 ~ 22790973 (-) True AMCG00018859
AMCG00018861 mRNA downstream 36284 22767461 ~ 22768061 (-) True AMCG00018861
AMCG00018856 mRNA downstream 43917 22753967 ~ 22760428 (-) True AMCG00018856
AMCG00018844 mRNA downstream 158978 22637693 ~ 22645367 (-) True AMCG00018844
AMCG00018843 mRNA downstream 214021 22588552 ~ 22590324 (-) True AMCG00018843
AMCG00018860 mRNA upstream 3147 22809485 ~ 22821646 (-) True AMCG00018860
AMCG00018857 mRNA upstream 33194 22839532 ~ 22850722 (-) True AMCG00018857
AMCG00018855 mRNA upstream 54753 22861091 ~ 22862779 (-) True AMCG00018855
AMCG00018858 mRNA upstream 64821 22871159 ~ 22875760 (-) True AMCG00018858
AMCG00018863 mRNA upstream 70323 22876661 ~ 22887044 (-) True AMCG00018863
TU149076 other downstream 690650 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2106518 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2198525 20603518 ~ 20605820 (-) False AMCG00018794
TU148730 other downstream 2198525 20603518 ~ 20605820 (-) False AMCG00018794
TU148728 other downstream 2313607 20490211 ~ 20490738 (-) False AMCG00018790
TU149755 other upstream 2269060 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2328433 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2379869 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 4007142 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4424535 27230873 ~ 27242574 (-) True G119893

Expression Profile