RNA id: TU149380


Basic Information

Item Value
RNA id TU149380
length 701
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G119180
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22982866 ~ 22983566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGGTTTTATTGGGACCTGAAGATTTTCTTGTAACTATAATGTCTGGAGTGCACAGGGCCTCCTGTCACCATTCATCTCATCATCATTTTTGTGGAAATCAGCCAATTGAGCCCCTGAGTTGCCACCACAATCAGCACAGTTAGCATTACCTTGCTTGCCTCTCCGTGGAGGTTGCAAGACAGCCACAGGACACTATTAGAAATGAGTTTAGGTGTCTATTTTAATCTACTGCAGAAAGCACAGGGACTTCTGATTACTGCATACATCTTGACCACTGTTTATCTGCATAGGCAGGAAGGTGGGATTTGAGTTGTTGTTGAATTTCTGTGATGTATTGGCATTCTGTTTTCTCAATCCGCCatgtgtaattaaatgtatcttaGTGTGggaagtaatgttttttttttttttttttttttttttttttttaaacatttgtgaaaaATCTCATGGATTCAATTAATTGCCACCTCCAAGCCATCAGAGGATAAAGTGCGATTACTCCCACCCCCCTCCACAAAAGAACAGAGAAGGGATGAGATTGTTTCTGCAAAGATTTAGAGACTCTGTGGCTTACAAAACTTAATAAGTTTCACTGCATTATTGGGCCAAGGGAAAGCTTAAGCATTATCAGGATGGAGTTTTTATATTGCAAAAGTGGTGAatgtatgcaaatgtaaaattaaatctacGCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149321 lncRNA downstream 125187 22834759 ~ 22857679 (-) True G119129
TU149317 lncRNA downstream 216840 22762360 ~ 22766026 (-) True G119128
TU149243 lncRNA downstream 315656 22666929 ~ 22667210 (-) True G119072
TU149241 lncRNA downstream 318767 22663833 ~ 22664099 (-) True G119070
TU149209 lncRNA downstream 352741 22627545 ~ 22630125 (-) True G119048
TU149381 lncRNA upstream 618 22984184 ~ 22984772 (-) True G119181
TU149444 lncRNA upstream 126035 23109601 ~ 23111520 (-) True G119235
TU149635 lncRNA upstream 1535847 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA upstream 1582580 24566146 ~ 24568299 (-) True G119384
TU149701 lncRNA upstream 1853221 24836787 ~ 24842121 (-) True G119426
AMCG00018862 mRNA downstream 55431 22899552 ~ 22927435 (-) True AMCG00018862
AMCG00018863 mRNA downstream 95822 22876661 ~ 22887044 (-) True AMCG00018863
AMCG00018858 mRNA downstream 107106 22871159 ~ 22875760 (-) True AMCG00018858
AMCG00018855 mRNA downstream 120087 22861091 ~ 22862779 (-) True AMCG00018855
AMCG00018857 mRNA downstream 132144 22839532 ~ 22850722 (-) True AMCG00018857
AMCG00018867 mRNA upstream 3659 22987225 ~ 22993237 (-) True AMCG00018867
AMCG00018868 mRNA upstream 15069 22998635 ~ 23011253 (-) True AMCG00018868
AMCG00018866 mRNA upstream 28856 23012422 ~ 23032810 (-) True AMCG00018866
AMCG00018864 mRNA upstream 50803 23034369 ~ 23047483 (-) True AMCG00018864
AMCG00018865 mRNA upstream 72754 23056320 ~ 23083052 (-) True AMCG00018865
TU149337 other downstream 176528 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 869171 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 2285039 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 2377046 20603518 ~ 20605820 (-) False AMCG00018794
TU149755 other upstream 2091832 25075398 ~ 25077580 (-) False AMCG00018898
TU149831 other upstream 2151205 25134771 ~ 25171644 (-) True G119538
TU149840 other upstream 2202641 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 3829914 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 4247307 27230873 ~ 27242574 (-) True G119893

Expression Profile