RNA id: TU149481


Basic Information

Item Value
RNA id TU149481
length 702
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id G119272
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 23895027 ~ 23928632 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTTTGTGCCATGTTTCAATCTTAATAAAGAAGTCATCTTTCATGTATTCATTCGTCACAATTGTCCTGCAGTAAGGATATGCATTCCATGCCTTTTCATGAAACACCAGGGCCCCCTCTGGTGCAATCATCTTTACAAATCCGGGAACTTTACTCTTTAGATGgtagattttgtgtgtgtactgtccTTTCTCCCCCTCCTTTTCATAGGGCTCATTCTTTAGGACTTCaattccttctcctcctccggTCTCGTTCTTACTCGCCTCCGCCACTGAGAAGAGCTGCCCAACTTGATACTCTTCCACCGAGCAGGGTAAAACCACACGaTATTCCTTAATCAGCACCATCTTCTCTTCACCGGCTGCGGCTGCGCAGGCGCTGACGTCACCGCGCTTTTTCAATGTCGACTGAATCCCGCCTTCTGCCGTCGCTGATTGGCCAGAGAGGGAGACGCTCGCTCCAGTGAGGAGACAGAGCAGGGACGCACCCGATTGGGCCGTGCTCTTATCAGTCAAAACGAAAAGTgggaagaattaaaaaatgccACTGGGTTGTTGCGCCACCCAAGGAAGCACAGAGTCCAGGCAATTGGTGCCGTTTTGGCTGCGACTGTGAGTTTATCAGACCTGGGTCATATATGTATGTTCTGTATTTCCAATGACTTCAAATGCTTTGccaaaatatattgtatccTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149443 lncRNA upstream 783507 23109601 ~ 23111520 (+) True G119234
TU149439 lncRNA upstream 786427 23094566 ~ 23108600 (+) True G119231
TU149378 lncRNA upstream 899837 22994976 ~ 22995190 (+) True G119178
TU149377 lncRNA upstream 912228 22979271 ~ 22982799 (+) True G119177
TU149282 lncRNA upstream 1033219 22765551 ~ 22861808 (+) True G119100
TU149524 lncRNA downstream 429347 24357979 ~ 24367333 (+) True G119308
TU149536 lncRNA downstream 457964 24386596 ~ 24425356 (+) True G119315
TU149546 lncRNA downstream 530649 24459281 ~ 24462914 (+) True G119324
TU149547 lncRNA downstream 530649 24459281 ~ 24522664 (+) False G119324
TU149585 lncRNA downstream 609034 24537666 ~ 24599014 (+) True G119354
AMCG00018850 mRNA upstream 1024254 22862980 ~ 22870773 (+) True AMCG00018850
AMCG00018853 mRNA upstream 1059943 22820669 ~ 22835084 (+) True AMCG00018853
AMCG00018852 mRNA upstream 1079164 22807605 ~ 22815863 (+) True AMCG00018852
AMCG00018854 mRNA upstream 1087995 22800053 ~ 22807032 (+) True AMCG00018854
AMCG00018851 mRNA upstream 1096662 22792277 ~ 22798365 (+) True AMCG00018851
AMCG00018876 mRNA downstream 444008 24372640 ~ 24377928 (+) True AMCG00018876
AMCG00018886 mRNA downstream 781042 24709674 ~ 24713528 (+) True AMCG00018886
AMCG00018899 mRNA downstream 1155544 25084176 ~ 25090285 (+) True AMCG00018899
AMCG00018897 mRNA downstream 1162499 25091131 ~ 25117419 (+) True AMCG00018897
AMCG00018908 mRNA downstream 1207955 25136587 ~ 25144798 (+) True AMCG00018908
TU148883 other upstream 2705781 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 3138807 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 3291712 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 3300888 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 3302011 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 1305450 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 1555665 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 2531988 26460620 ~ 26461227 (+) True G119762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU90912 False 541 TUCP 0.49 8 NC_053117.1 39428281 ~ 39447195 (-)