RNA id: TU149585


Basic Information

Item Value
RNA id TU149585
length 2421
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G119354
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24537666 ~ 24599014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcATATTCATATAATCTGTAGAGGATGGTTGCTATGCTCTGAGGGAATACAATTCCATAgcaacataaatacaaaagtgcCATTTAAGAAAGaattggagggggggggggtaaaattaaagaaattaaaacatacagtaaacattCATTCTTATCCAACAAAGGTGTTTTGGCAGTACTCTGTCCCCAGTAGTTTTGTCTGTTCATTGGGGTTTGTTCTTTTAAGTTCACCTAGCAATCCAGTTCTATTGGGTCACAATGAACGTTTCCAATTCCGTGTCCAGGTCCTTGCCATTCAGATTTCCTAGGCCAGAGATCCACAAGCATTTTTTTAGCACTATGATCTTGCCAATACAGCAAAGCATTGTCATTTTAAGATGTCTAGGATTACAATTGCACTTGCCAAAACatctaaaacacatttaaattgtttgcaaaaaataaaactttttttttttccaatgtagGGGTAGTATCAGCATTTCAGTTTCCAAATCTTTTCGTCACCCATAAAAACTGCTTGTGCATCTCCAGACTGAGGCAACATAGGTTGGGCTGGGTTCAGAACACAGGGTCACATTTCTGCAAACTCTTTCAATCCATTCAGTACTGCAAAATCATAAAAGGAGATGACAtgtcaaaggaaaataaaagcaagagagattgttttttgtgttttacgGACACATCTGTGAAGTCACGTTGCCATGACAAGTCCTGAGCTGATGTCATTTCTAGGTGGGttattaaaaacagtaattacaattaaaaactgaCACGCAAGGGGCTGAAGGAAACGGCGGGAGATGGAGGCACGTTACTTTGTGAAAACGTTTTTCTATTTCAAGACTGAAGGACGCTAAGAGGGCCCAGAGCAGCGAGGGGTCTCTCCTGCTGGAGTGTGGGACAGTGACGGAAAATGGGCTGGAAATCTGCactggaaatgcatttaattagcatttcctcattattgaaattgaaaggaAGATTCTTTACCACAACTCCCAGTTTGTGTTCATGTTCTTTTTTCCCCGACCACCCCCATCATTCCACTCAATTGAGCATTCTCcaatcaagaaacaagaaagagaaaactgtACAAACACTGAGAATTTCTGATGCGTTCGTTATTCATTtaagggaaaaaactaaaaattcaTCTTTGTCCTCCAAAACATGCACTATCTTGTTATTACATTGCAAACCCACATCACAAACAGTAGCACTAAGATTGCCCAAACCCTTTGCTTTATAACACTGCAGGCTCACAGGCACTAGGTGATCCACATAGGTCTCTGTATAGTGTCACTAAACACTACTGTTTAGTAGTATTGCAGTATGTTACCTAAGGTGGAGCTGTTGGCTCATTGTTAGAGGGCATTGGGACTCTCTTGACTTGCCCTCTTGTTGTTGAGAATTCAGCTATCTGTCATGTTAAACTTAAATGCCAGACCAGGTAATTGCATAAAGAGCAAGTAGTGTTATTCTCCCCCCATGTGttgaataacattttgaagTAACATTTGTGCAATTCTGTCTGTCCACACTTAAGAAGATCAGTCCATCTCCCTCCCCTTTTGAAGAGTTCTCCTGTATTTTCAGCACAGGCAAAACTTGTGGCGACCTTCCCATTTTATGCCCTCTGATCCCTTCCAGTGGAAGAACGTAAACAAAAGCAGGAGTGCTTTGGCTTTTCTGTTCCCCATGTCATCATGGGCTTTTATTGCTGTTTGACCAGTTCAAGGATGTGGCTGAGAATAATAAAGCCAAGCACTCGCTCTAgtttttctaaaaagaaaatccaatcCTTCTTCCTGAAGGGGTCACAAGGCCCAACTGGGAGAGCACACTGTGCCACACCAAACCTACATTGAAAACAGGGACCTACTTGAGGAACATGACAGTTTTAACACGACAAATACAACACAAGGGACATACTGTAGTTGTTCTTTTAGACTCATTAAACTGAGCTGGATCTGAACCCTAGTGGTCCAATATTTGAAGTCTTCAAAACATGGGTTTAAGAACCTACTGTGCCGCCAGTTTATGACCTTTTGTTAGTGAGAAATGCTCTTTTTAGAACCGGAATGAGgcgagagaagagaaaaaagaatcCCCCCCAACAAACTTCAGGACATGACCATATAATTGAAAAGGAAAGACTTGGAAGGAGGGTTGTGTGTGCAAACTGGGGGTCTTTTAATAAACGAGTGTTGAGCTGAGGATGCtacagaaaggagaaaaaaaattggacctttaaaataaataaacatcacttGTTAtgactaaaaaataaaataatcttaaaaaaataaaacaagcaccGCGAATGACTGCTCTTAGAAGCAGCTTGAAAAAGTATGAATTCCCTTCCTCTAAGTACtcaaatttctttttttttttttttatttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149547 lncRNA upstream 15002 24459281 ~ 24522664 (+) False G119324
TU149546 lncRNA upstream 74752 24459281 ~ 24462914 (+) True G119324
TU149536 lncRNA upstream 112310 24386596 ~ 24425356 (+) True G119315
TU149524 lncRNA upstream 170333 24357979 ~ 24367333 (+) True G119308
TU149481 lncRNA upstream 609034 23895027 ~ 23928632 (+) True G119272
TU149685 lncRNA downstream 200936 24799950 ~ 24835709 (+) True G119416
TU149688 lncRNA downstream 208733 24807747 ~ 24809819 (+) True G119419
TU149704 lncRNA downstream 251822 24850836 ~ 24851050 (+) True G119429
TU149814 lncRNA downstream 704172 25303186 ~ 25313495 (+) True G119523
TU149822 lncRNA downstream 732376 25331390 ~ 25338189 (+) True G119529
AMCG00018876 mRNA upstream 159738 24372640 ~ 24377928 (+) True AMCG00018876
AMCG00018850 mRNA upstream 1666893 22862980 ~ 22870773 (+) True AMCG00018850
AMCG00018853 mRNA upstream 1702582 22820669 ~ 22835084 (+) True AMCG00018853
AMCG00018852 mRNA upstream 1721803 22807605 ~ 22815863 (+) True AMCG00018852
AMCG00018854 mRNA upstream 1730634 22800053 ~ 22807032 (+) True AMCG00018854
AMCG00018886 mRNA downstream 110660 24709674 ~ 24713528 (+) True AMCG00018886
AMCG00018899 mRNA downstream 485162 25084176 ~ 25090285 (+) True AMCG00018899
AMCG00018897 mRNA downstream 492117 25091131 ~ 25117419 (+) True AMCG00018897
AMCG00018908 mRNA downstream 537573 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018902 mRNA downstream 572471 25171485 ~ 25188842 (+) True AMCG00018902
TU148883 other upstream 3348420 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 3781446 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 3934351 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 3943527 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 3944650 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 635068 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 885283 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 1861606 26460620 ~ 26461227 (+) True G119762

Expression Profile