RNA id: TU149685


Basic Information

Item Value
RNA id TU149685
length 2281
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G119416
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24799950 ~ 24835709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTGCTGTCAGTGATGGCCTTGTGTGTGGAAAGTGTGAAAGGAAGGGAAAAGACTGACTGCATGTTTCAGAGTACTGCCTTCCCAGACCATCAAACACTCGTCCTCAGACTTAAGTCTCATCAACAAACTCACTCAGATCACATTGAAACATACTCACAACACTCTTGCCCATTAAAGGACAGTTTGAAATCAAAACCAGGCTCTGATTATGGAGTCTTTGTGATATAATTTAGGACCTCCCGAGATCTCAGACAAATCCCGTCTCCTAGCCAATGATATGTCAATGTTACGTCACCACAGGACAATCCAGGACACAGCAGAATGTAAAACTCGAGCCCTGAGCTACAGACCGACAGTGAGCGTTACCCTGGCGACGGTGTGGGGCCGGTCTGTGGGAAGCTGCGTTTATGGTCCTCAGGGCAGGGTGGGTGTACACCCCGGACACCAGGCTCCATCGATCTCTGAGGCCTCCTGATCTGGGTGCTGGAGTGGGCCTCCCTGCTAGAAAAGGTGTCCTGGGGCTCTGGTTTCCAGCGCTCTCTGGAGCCCACCGTCGCCTTGCCCAGCTTCTCTCTGGCTGGGGCCACCAGGGCCGTGGGCCTCACTGTCACCCGCTCCAGGGCCTCAGGGACCAGGTCAGCTGTCAGCACAGAGCAAGGGAAAACAAGGGAGGTCCGAGATGATAGTCAAACATGCAAAAGAAGCCCAAGCCTAAAAAAATtggaaattgaattgaaattgaagcttGACAATCATCTATTCTTGTGCTAAACAAATTCAGACTCGCCGATTACTACTCTACCTGGCTCAATGCTACAACTGCTCAGAGCGCACCAGCTGCACATCTCACACGCACACGTCCTCGGAAACACGCCAAGCACCCCCCTTTCAATCTGTTAGCACGAGATGTGAACAGCAAACATATTGTGCCAGGATCAGGCCACCACAAGCAGATGAGGCATTGAACTGCAACCAAGCCAATTTCAGAGGTGCTTGGCAAATCGTGGTGCCTCTGGGCCAACTGACTATACACAGGCCACAGCTGAATGATATCCAGGCTTTTGGGCAAATCCCAGGAGCATCTGACCTCCTAAACCAATGACTTTACGGCCAAAATTGGTTTTACAGTACAGCAGTTTCTCAGGCTCTGAAGAAGTCTTCAAATAGTGATTACTGGCACATATAATGACCAGGTGTTCAGGTGGAAGAAACCCAAGTGGCACTCCAAGCACAGCACTGGCCCTTCAAGTCAAGAGACTGCACACTCATCAGAGCTCAAACGCGCACTGCTGTGTGGCATTTCTCACCCTGGTGTCGCAGGCGTGGCCTCAGCAGGTCTGGAGGGCTCTGTTGCGTGTTGTCCACTTTGGGAGGAAGTGCTGTCCGGGCAGAGGGCTTCTCCACGGGGTAAGCAGTTCCGGGACGGAAGCCACATTTGTCCTGGAAATTTCACAAACAAGATCAACACTGACTCTTCCAAAATACTGTTGAACCCGGTTACACAGGAGTCTAAGAAACTCTTAGTGGTGTCATCTAACCTAGTGAATAAGTGTCAGCAGATTCAggattaaaacaatgtttttcttgatCAGAAGCAGCAGCATATACTGAACACCACAGATCCTGTGAAGACAAACTGGCCCTTCGTACACCTGCCAGGGACGTACCTGGTGATGAAAGACGACGTCCTCCTCGAGGGTGACTCCGCAGAACTCGCAGGGGATGAGAACGGCACCCTCTTGTGGCTGTAGAGGAGGGCTGTGGGACAGGGAGGAGGCGTGGCGAGGCGGgctgggggggctgggggggctgtAGGAGCGGTAGAGAGGCCCCTGCCCACCCCGAAAGGGCCAGTCATCTTGAAGAGGGGAGGGGGCTCTCTTACTGAAGGAAGCAAAGGCACTAGCAGGGCTGCAGCCAGTCTGCAAGCAAAACAGGAAGACATTTACATAGCAATACCAGACTtaagcatttattaattttcttaaaattgCATGGCCCAGGTTGTGCTGTTTGGTGTGTTGTTCCTGTATCATTCCCTGGGTACCCTTGTTGGTGAAACTTCTACggcacttttgttttaaaagcgaaaatataacaaatacatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaattttaatggtaggacagacagacagaataacaacaaaaaaatccagaaaaacgcatttcaagaAAGTTATAAANNNatttgcctgttaatgagggaaataagtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149585 lncRNA upstream 200936 24537666 ~ 24599014 (+) True G119354
TU149590 lncRNA upstream 230966 24565712 ~ 24568984 (+) True G119359
TU149547 lncRNA upstream 277286 24459281 ~ 24522664 (+) False G119324
TU149546 lncRNA upstream 337036 24459281 ~ 24462914 (+) True G119324
TU149536 lncRNA upstream 374594 24386596 ~ 24425356 (+) True G119315
TU149704 lncRNA downstream 15127 24850836 ~ 24851050 (+) True G119429
TU149814 lncRNA downstream 467477 25303186 ~ 25313495 (+) True G119523
TU149822 lncRNA downstream 495681 25331390 ~ 25338189 (+) True G119529
TU149876 lncRNA downstream 650136 25485845 ~ 25488149 (+) True G119574
TU149934 lncRNA downstream 879224 25714933 ~ 25718248 (+) False AMCG00018922
AMCG00018886 mRNA upstream 86422 24709674 ~ 24713528 (+) True AMCG00018886
AMCG00018876 mRNA upstream 422022 24372640 ~ 24377928 (+) True AMCG00018876
AMCG00018850 mRNA upstream 1929177 22862980 ~ 22870773 (+) True AMCG00018850
AMCG00018853 mRNA upstream 1964866 22820669 ~ 22835084 (+) True AMCG00018853
AMCG00018852 mRNA upstream 1984087 22807605 ~ 22815863 (+) True AMCG00018852
AMCG00018899 mRNA downstream 248467 25084176 ~ 25090285 (+) True AMCG00018899
AMCG00018897 mRNA downstream 255422 25091131 ~ 25117419 (+) True AMCG00018897
AMCG00018908 mRNA downstream 300878 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018902 mRNA downstream 335776 25171485 ~ 25188842 (+) True AMCG00018902
AMCG00018901 mRNA downstream 367963 25203672 ~ 25213155 (+) True AMCG00018901
TU148883 other upstream 3610704 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4043730 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4196635 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 4205811 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 4206934 20592736 ~ 20593016 (+) True G118635
TU149795 other downstream 398373 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 648588 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 1624911 26460620 ~ 26461227 (+) True G119762

Expression Profile