RNA id: TU149814


Basic Information

Item Value
RNA id TU149814
length 1712
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G119523
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25303186 ~ 25313495 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGTATACCAgcagttttataatttttaatgcGAAAAGCCATGGCAACATCACACTGGAGAAAATGcatagaaacaaatatgtaaaccaTTCACATACATTATGGATGCAATCTCTTGCTAAACTAGATGCATTCAATGCAGGCGCTCTTCGTGTAAGGTTCGCTGCTGGGATGTGTACATTGCCACCTCTGATCACACTCCTAGAATCATCTATTGGCAAATATACAAGTCAGGCACCTGTtccttaaaatgtaaacaatcaaATACAGGTTTTCTagcttttattttgcaaataaaaacaaagaaacacttcATTCTAGAACattaccccccccacccaccccaccccccccaacatACACAATCCCCACAGtctttattaaacatgtatacaatagtttaaatgtggaaaatttGAACTCATGAGGTTTTATACAAGGTATTGCCAATGCTGGACAAAATTATGCaaggtatatatacacacaaacacacaaaagattTTCAGTGAGACAGAAGACGAGATTGAAATGAAATCATTCTCTAATGAAAAACTCTAAAGGTGTGATAAGTTACCAATacctgaagaaaaataaagagctATATTAGctttaagacagaaaacagacatgCCTTGAAGGAAAAGGGACCTTACATATTATACTACTAATGCTAGAGACatgcaacaaaaaaaacaatcctcttTAGAAAGTGTTACATGCCTTTACTTAAAGTGGAGCAACCTGCGTCTAGTACTGAAAGCTGCATAAGGAATCATCTTGAATAAGTGTCAcattcaaaagaaacaaaataaggcAAGGCATCTTGTTAAAAATgactaattataaaatgtatactggTGTTAAGCCAAGAAAAACGCTGATAAAGAGTCttaattcattttgttataGTGATAGTATGCACTCCCTTACAATGTGTGAAATTTACAGGGGATCAATGatctgaaatataaaattaaatgtgaaatggtGAAGTGTTAATAAGAGAAAGACAACATCTAAAAGAATTGCTTTATTCATTTGAAGTATACAGTACAGGAAGTGTGCTTAAAATACACCAATTCAGTGATGGGAGCAGATGGAATCATTATTACTTCTGATCACTACACAAGACAAGTGTGTCAAATGTGGGAAATAAAACTTAACTAAAATCCTTATGGGATCGTCTTTGCTTAGTTCTGAAGTTCATTCTATGCAAATACTTTTCACAGTGGTTTGAGCAGTTTGTGTTGGGTTCCATCATGTATAGTGGAAAAAACAGGCAGGTCTATTATCTGAAACCTGTTTGACTGATGCGTCTTCTCGGCTTCCAGCAAAGCACAATCCATTGGTGGCGGAgacatttacattgtaaaaagTGCTCTGAAATGTGTTGAAGACTGGCTGCAAACGAGTACATAAACCCAAAAGTTGTTGAAGAGAAAACAGCCATTGAAGTCTGAAGATCTAGAAAAATCTATTCACTTTCACCCTTTACCTTGAAGTAGCAGTCTTCTCAGTTGCTGTTGCAAATCGAACCAAacagtttttcatgtttgaGAAACCACTAGACGAGAAGTAAAATCTATTCCAAGCAAGCCAACcaataaaacattacagaaaaagggtaattttgtttaaaaatggagATTGTATGTTACAAGTCCACCAGGGCAATGCCAGCATGTCCTATTTTTTTTTTGCTTGCTTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149704 lncRNA upstream 452136 24850836 ~ 24851050 (+) True G119429
TU149685 lncRNA upstream 467477 24799950 ~ 24835709 (+) True G119416
TU149688 lncRNA upstream 493367 24807747 ~ 24809819 (+) True G119419
TU149585 lncRNA upstream 704172 24537666 ~ 24599014 (+) True G119354
TU149590 lncRNA upstream 734202 24565712 ~ 24568984 (+) True G119359
TU149822 lncRNA downstream 17895 25331390 ~ 25338189 (+) True G119529
TU149876 lncRNA downstream 172350 25485845 ~ 25488149 (+) True G119574
TU149934 lncRNA downstream 401438 25714933 ~ 25718248 (+) False AMCG00018922
TU149981 lncRNA downstream 725784 26039279 ~ 26078413 (+) True G119669
TU149998 lncRNA downstream 793974 26107469 ~ 26107849 (+) True G119682
AMCG00018909 mRNA upstream 9029 25287408 ~ 25294157 (+) True AMCG00018909
AMCG00018900 mRNA upstream 41904 25245645 ~ 25261282 (+) True AMCG00018900
AMCG00018901 mRNA upstream 90031 25203672 ~ 25213155 (+) True AMCG00018901
AMCG00018902 mRNA upstream 114344 25171485 ~ 25188842 (+) True AMCG00018902
AMCG00018908 mRNA upstream 158388 25136587 ~ 25144798 (+) True AMCG00018908
AMCG00018913 mRNA downstream 152596 25466091 ~ 25484837 (+) True AMCG00018913
AMCG00018915 mRNA downstream 220608 25534103 ~ 25544880 (+) True AMCG00018915
AMCG00018914 mRNA downstream 241961 25555456 ~ 25582394 (+) True AMCG00018914
AMCG00018918 mRNA downstream 270821 25584316 ~ 25592691 (+) True AMCG00018918
AMCG00018919 mRNA downstream 288424 25601919 ~ 25611337 (+) True AMCG00018919
TU149795 other upstream 35405 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 4113940 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 4546966 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 4699871 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 4709047 20593366 ~ 20594139 (+) True G118636
TU149874 other downstream 170802 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 1147125 26460620 ~ 26461227 (+) True G119762

Expression Profile