RNA id: TU149831


Basic Information

Item Value
RNA id TU149831
length 1148
RNA type TUCP
GC content 0.46
exon number 7
gene id G119538
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25134771 ~ 25171644 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCACTCTCAGGGTTGTAGATTTGATTGAAGAGAGTCTGATATCAGCTGGAACCTTGTCTCCCACGGCAACTTCAACAATGTCTCCAGGGACGATATCCCTAGCTTTGATCCTCTGCACACTCTTCCTGTCTTGCCGGTACACCTTGCCCATCTCCGGCTCGTACTCCTTAAGGGCTTCGATGGCATTTTCAGCGTTCCGTTCCTGCCACACACCCACAATGGCATTGGCTATTAGAATAAGTAAGATTACAAAAGGTTCCACAAAAGCTGTAATCGTTTCCTCTCCCTCCTCGAACCAGGCCAGTACAAAAGATATACAAGCTGCCAGAAGAAGAATTCGTACTAATAAATCTTCGAACTGCTCTACAACGAGTTCCCAGAGAGACTTTCCTTCCTCAGCTGGCAATTCATTCGGTCCCCATTTCTCTTTCAACTTTTTCACCTGATCCAAGCTCAGTCCTGTGCTCTCATTGACGTTGAAATGGCTGTAAACTTCCTCCACTGTCTTTGTGTGCGTGTTTTCCATGGTGGATCTCGCCTCCTTGAGACAGTTTACTTTGTTGATTCAAACACCCCCGTCCCTTCCGTAAGtataaaacagcaataaaacgCTATGCActatgcatttacatttaaatacctcCGATGatgggaaaaatacatatataaaaaggggtttaaaataaatccccGGCTTTTATTCACGAAGAAAAATGATGCGTCCCCCAGTTTTGTCTTCCAGATCTCCCAGATTGTATTCTTCCAAATTAAAACCACAGAAgaaaaatcTTTATTTGCTGGGAGCTGGTGGTTGACGTTGTGCAGCGATCGCAGCACCCTCAGCTTAATACACTTCTTCAGTACAGTCCAATGCTATAGAAGCTAGTCTGCCCTCTTCCCAGTTGCAGCTCACCAGTAATTGACCGCTCCGTGCAGCGCCGGGCGCGTTTTATTGAAAGTGCCTCACTGCTGCCCCTCTTGCCTGCGCCGCATGTGGACTGCGCTCATTGGATAGCAGGAGGccggaaatgttttttttttttcgttctctctctctctctctctctctctctctctctccacactttGCCCCTTTTTTGAAACTCGTTGGATCAGCTGATAACTTTGAACAGCACACCACCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149749 lncRNA downstream 89427 25044951 ~ 25045344 (-) True G119466
TU149701 lncRNA downstream 292650 24836787 ~ 24842121 (-) True G119426
TU149635 lncRNA downstream 526309 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA downstream 566472 24566146 ~ 24568299 (-) True G119384
TU149444 lncRNA downstream 2023251 23109601 ~ 23111520 (-) True G119235
TU149859 lncRNA upstream 90718 25262362 ~ 25333175 (-) True G119557
TU149903 lncRNA upstream 307366 25479010 ~ 25479524 (-) True G119600
TU149919 lncRNA upstream 400410 25572054 ~ 25578122 (-) True G119615
TU149942 lncRNA upstream 418928 25590572 ~ 25656954 (-) True G119632
TU149947 lncRNA upstream 433387 25605031 ~ 25606144 (-) True G119637
AMCG00018898 mRNA downstream 50185 25075398 ~ 25084586 (-) True AMCG00018898
AMCG00018896 mRNA downstream 61655 25071542 ~ 25073116 (-) True AMCG00018896
AMCG00018895 mRNA downstream 126829 24961078 ~ 25007942 (-) True AMCG00018895
AMCG00018894 mRNA downstream 199819 24889631 ~ 24934952 (-) True AMCG00018894
AMCG00018892 mRNA downstream 257964 24856214 ~ 24876807 (-) True AMCG00018892
AMCG00018904 mRNA upstream 21520 25193164 ~ 25203675 (-) True AMCG00018904
AMCG00018903 mRNA upstream 41995 25213639 ~ 25217823 (-) True AMCG00018903
AMCG00018906 mRNA upstream 48460 25220104 ~ 25225859 (-) True AMCG00018906
AMCG00018905 mRNA upstream 67253 25238897 ~ 25244280 (-) True AMCG00018905
AMCG00018907 mRNA upstream 95104 25266748 ~ 25285927 (-) True AMCG00018907
TU149755 other downstream 57191 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 2328433 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3021076 22080464 ~ 22113695 (-) True G118936
TU148773 other downstream 4436944 20696834 ~ 20697827 (-) False G118727
TU148729 other downstream 4528951 20603518 ~ 20605820 (-) False AMCG00018794
TU149840 other upstream 14563 25186207 ~ 25187408 (-) True G119545
TU150163 other upstream 1641836 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 2059229 27230873 ~ 27242574 (-) True G119893

Expression Profile