RNA id: TU149903


Basic Information

Item Value
RNA id TU149903
length 515
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G119600
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25479010 ~ 25479524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACATACAAGGAAAATTTGTTTGCTGaatggagaaacaaaacaaaaaaatctatatcCCAGGCATTTATATGAAAATCCAGGCACTAATTGTTAGTCACCTTTTCTCCGAAGATCCTCTGGCAGATGCCGTTCTTGGCCAGCTTCTCCTTGACCTGCCGCGTGAGCTCGATGGTGTCCACCTCACGGTACATGTACATCTCGTACTGCTCCGGTGTGAGGGGCGGCACGGTGGGTTTGAGGGTGCGGGGCACGTAGGCAGGGTAGTACGAGAGGCGGCCGGTGGGGCCCTGGGCGTCACCGCTGCCTGAGGCGTCGGCCTCCACCTTCACCTCCAGGGGGCGCCCGGGCTCCTCCTCGGCGGCGGAGGCCTCCTCGCTGTTGGGCAGGCTCTCTCCGTTCTCGGGCCGGGGCCAGGGCCGGGGCAGGGCGGAGTagccggaggaggaggaggaggagagagaaggggagacgGAGGTGAACGGGCGGGTGCTGTTGCCGCCAGCAAGCCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149859 lncRNA downstream 145835 25262362 ~ 25333175 (-) True G119557
TU149749 lncRNA downstream 433666 25044951 ~ 25045344 (-) True G119466
TU149701 lncRNA downstream 636889 24836787 ~ 24842121 (-) True G119426
TU149635 lncRNA downstream 870548 24519413 ~ 24608462 (-) True G119382
TU149638 lncRNA downstream 910711 24566146 ~ 24568299 (-) True G119384
TU149919 lncRNA upstream 92530 25572054 ~ 25578122 (-) True G119615
TU149942 lncRNA upstream 111048 25590572 ~ 25656954 (-) True G119632
TU149947 lncRNA upstream 125507 25605031 ~ 25606144 (-) True G119637
TU149966 lncRNA upstream 239062 25718586 ~ 25718976 (-) True G119655
TU149986 lncRNA upstream 540703 26020227 ~ 26068649 (-) True G119672
AMCG00018910 mRNA downstream 140957 25331301 ~ 25338053 (-) True AMCG00018910
AMCG00018911 mRNA downstream 163798 25303537 ~ 25315212 (-) True AMCG00018911
AMCG00018912 mRNA downstream 177308 25294104 ~ 25301702 (-) True AMCG00018912
AMCG00018907 mRNA downstream 193083 25266748 ~ 25285927 (-) True AMCG00018907
AMCG00018905 mRNA downstream 234730 25238897 ~ 25244280 (-) True AMCG00018905
AMCG00018916 mRNA upstream 9920 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018917 mRNA upstream 68018 25547542 ~ 25553092 (-) True AMCG00018917
AMCG00018920 mRNA upstream 117012 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018925 mRNA upstream 865106 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018926 mRNA upstream 887826 26367350 ~ 26410785 (-) True AMCG00018926
TU149840 other downstream 291602 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 307366 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 401430 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 2672672 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3365315 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 1333956 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 1751349 27230873 ~ 27242574 (-) True G119893

Expression Profile