RNA id: TU149919


Basic Information

Item Value
RNA id TU149919
length 5964
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G119615
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25572054 ~ 25578122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAGGGTCTAAGCACGTAAGGCTGCCGTCTTCAGGCACCAGGTGTGCATTGTATCGCTCGCTGGGCACCACCTCCACCATCTCCCCAGCCTTCTGCCGGCCGCCCACCTTCGTCTTGATGAAGACTCCAAAGCCAATGTCTGCCCCTTCACTGGCAAACTGCCACCTGGAGGgaaaacggagagagagagaaaacaaatgttacataagtactttttttttcttttgagagTGAGCATGAGGGATAATGGTTAGTGGGGGTCTTTGCTCATGAGAAGAAATGCTCTATAGGTCACTCACCTTAACACACAGCCTGGAAAGAGAATTTCAAACTCCAGCTGCTGGGAAGAACCACGGCTAATGGATATGGTCTGGTCATACTGCTGTTTCACAGATTCACGGACGTAGTAAGATTTGGGGACATCGCCACCATACTTaatctgcaacacacacacaagtcaagCCCATGTACACAGAAACACCAGATGCAGTAAAACAACTGAATCAAtggaaatttaaaaacagacaagacTTACGTTATAAAGCAGTGCAAGTTGACTGCTGTGACTGAGCAGGCCCTGGGAGAATTAGCTACTTGCTATGTCAGAAGGAGCATTGGTGCCGTTTTGAGTCTATAGAGGCATGAAGTGACATTGTTgcaattgataaaaaaaaaaaaaaaaaaaaaaaaaaagcttcaaatCGAGAGATGTTTGAGATTTTTACCGTGGCATTTGTGGCTTTCATGTTTTGCATGAATTAACAACAAATGGAGGGGTATGATAAAACTGGTTATGGTGGCTGACCGTTTttcttacattatttaaaaggcAATCAGCACCAACCGGCAGTCAATTTCACCCCCTTCCATATACACTTGACATCAATGTGTTAAATCTGCCTGGCACTGACTCCGTGTTGACACATCTGTGCCATAGCAACCCTAACAGCCAATGAGCTCTGTAAGCCACTCAATTGTCCGTTTGCTGTCGCTCACACAACAGTTCAGTGGTGCCCTGTGCCAACCCCAGCACGGAGTCTACCAGAAAATATATGAAACTGTTAcacaactgcattaaaaaatcTCATCACATAACAGTAGGCATTGACTGAACACTGGGAAGACcccccaatttttttttctacaggaGAAGCCTGTCATATATATCTGAAGTGGTACTTGTTTAACTATTTAACACATAACTCCATCTGCCAAGCTTCCTTTAATTCAATTATGAATTATAAGAAGGTCAGTCAGAGTACTGTTCTGTCATACTTTACTTTCTTATATTATAGACTATatgtatattaactgtataatacatttttagttaacataatcaacaaacaaatgaaatagaaaacattAGCTAGTTCTTAGCTCCCAAAATGTGTCCctcaacaaataaaaacaacaacaaaaaagcagagAACAGATATAtgggaaataatatttaattaaggttagaatttttttttattagcacagaaacaaatactttaGATGTAAGATCAAAATCACACTGCACACAGTACATTAGAAACGCATTGCTCTACTCTAAGCACACTTAAGTCATctgagaggggggaggggaggttaACATCAGCTAGATTTCAGCAGACAGACATTCACAAACTCAAAGATTTTCAGCAGAACACAACCCACAATGGACAATAAACAGGCTCTCTGGAGACAGCCAGGATTTTAACAttcaagatgtgtgtgtgagaggtgGGAGGttagggaggggggggggggcaccaGAGTACTGCCCTGAGAGTGTTGTACAGCCCCAAAATGTCCTTGTTAGGAAAATGACAAGGGAAATTAAGCAGCTGGAAAAATTTACGGAGTGAACACAGGGCAAGTCATGAAAGAGTTGTTCATGAAGTCTGAATGTCTAGCTTTCACATCTGGCACTTGATCTGGTTCTCTTTGTATTTGTTGCCTTGAAATGGGGGGTCTGCAGCACTACTTGAGAACAAGACCCAGGTTGGGGTGTAAGCGTGCAAGAGATCAGATCACTCAATGAGCGAGAATAAATCAGAGCTATTGAGACCGACTAAAatccatttcacatttttgtacATATGCCTCTCTTTTCCACAACTGTCTATTTACCAGTGGAAGTACAAGTATACTGCAGTTTGTTATTACCAGACAGATGTTGGTGTAGAAGACAACCAATGAGCAGGACCTAATGTTATAGCCTAACAATAGCAGAGGGGATGtcaaaacagaaagagaaagggacAAATCTTTCACAAAACGACTTGCCTTTAATTGATAGTCCATTGTATTGTTGAGGCCAACTCTGACACCTGCACTTCactttgttaataaaaacaggGAAGTAAAGTAAAGTACTTAATCAAATATGACCACTTTCCATGAATcagctttttatgttttcttatgACTTATGACTCAATTTACTTCACCCAACCAGGAGAGAGCTGCATCTTTTAAGTCATTCTGTTGCAAACTGTTTTACATTAGTAGACATTAAATagactttgctttttctaatacTCTGTGGTCTGTGGTGAAATCTACTGCATTTTGTTCATTAGGATAAACAATGTAGGGTATTTTAGGAACTATTTATGAATGCCCTTTGTACTGATTCTCcagagtaaataaaataaaaatatatttttgaaagaaaataatctaCGATTAATTCCATGGTGATTcgtaaaatatgttttaggtATGATTgaattgagaaaacaaaacagacaaaaaacaacaaacaaatccctAAATATACCTCTGAATGCTTTCTGTGTGCACGGGCAAAATAAAGGCAGCTCAGATTTTCcactattaaatattaattgagAGAGCTAAAGGGCAAACATGAAAGCAGTTGACTTTCCAATAAAATCCTGCTGCCAAAAACACACTGAGGGGGGCAGGAAGTAATCAGGCAGGGATCGACAAACATATTGATCTGGTCAggttttaaatcataaaatctCTGCCTACATTTCAGGACCCTGGGATAGCTCTATCAGTAAGGTAGAGAATGTAGTGTTGATAGTTGGGGATCACCACTGGGCTGGAGGAATCAGATCAACTCCATCTGAACCAGTGAGGGAATAAAAGCTTGAGGGGGACAGTGTGACAGGTGTAGGTGGATGGATGCAGGTTGCATGATGGGAGAGGCTGAGGTCCGGGTGGCCAGACTTCTTTTCTGCTGGGTTGGACGGATTTATGTGGttgcattgatttgtttgtttgtttgtttgtttgtatgtccCACGGGCTCTACTGCAGCACCGAAAcactatgcatttaaaatgtattttttatgtttatggttTCTTTATTCATAGCACACACTATAAGCAGGTTCAACATTTGGAAATGAATAAGGGTGTGTTTAAAGAAGTTTGGGGAAGAAAGGAGCTACATATGTGGCCAGCCAAACATCAGAGAGTTACTGATGTGGCCCTGTACAATGGTTTAATGTAGAACAGTGGTTTACTAGGATAATACAGGCACAGTGAAAATAGGAGTTGTCCCTTCTATCCACTGCGAGTTCAAACCTCTTATCTGCCACCACGGcgaattaataatacataaagtaCAACAGGTGCAGAAAGAAAGGGATTGTCCTGTTCTTATCTTTGAACTCTCATACTCTGGATTCAAGTACTTTTGATATTTCAGATATATCTCGGCTCTCATCTATTTTTCAGCACAGCCCCTGGATTATTCTGACCTTTAGCTGTTAGCATGACAAAGCCCAGGACAGTATCTGGGTTTACAAGCAGAACATAGATTGCATCCCAATACAATGAGCATCACTGAATAATCAGTGTTAAAAAACCTGCCCTAATCGGActacttttctttcttgctactttcttgttttttgttttttattgcccACTCATAGGGCCAATGCGAAGTCATAGGGCCAATGTGAGGTCATAGGTGTGAAGTCATAGGGTCAATGTGAAGTAATAGGGCCAATGTGAAGTAATGGGTTTTAAGTCATAGGGCCAAATGTGAAGTCATAAGTGTGAAGTCATAGGGTCAATGTGAGGTCATAGGTGTGAAGTCATAGGGCCAAATGTGAAGTCATAGGTGTGAAGTCATCGGGTCAATGTGAAGTCAAAAGGTCAATGTGAAGTTATAGGTGTGAAGTCATAGTGTCAATGTGAAGTCATAGGGTTATTGTGAAGTAGGTTGTTCCCAATTCCTGTCCTTTGAAGACACTGTCCTTTGCAACACTCTTattcaggaaaacaaatctgaataacataattaaaagaccattttttttaaagaagacatCTTTGGTTCTTAATGTCCTATAGCTGTTTGGTAGATCACTGTCAATACACTTTCCTTATGTAAGCTTAACTTGGTAAATTTACCATACGAATTTTAACATTGTTGTACTGTGGTTATGGCTCATGGATTCCACAGGccttcactgtgctgtactatgcTGGGTCATGGGAATGCCAAGGCCTTTTTACTATGGTAGACGCAAAGTTATTCATGGTAgtgtgtagtaaagcacaggaAAGCACTGTAATACTATGGTACCACCATAGTAAAACCATGCTAAATAGGGgaatatgttaaaaaatgtaccaGGGTAAACAGTCATAAGGAATTCAATAGAAATtcctaacaaaacaaatgtggttGGGTTGGCCTACTGATGACTACAAACAGGCAGTGGAATAGGATAACAGACTATTTCACACACAAGGGCAAAAGAAGCACATTGTAATTGTGGCCAAGTAGCATATGAACAGCTTATCATTGATAAAAGGCATAATTACACTAATTACAATGGCTCATTCAGGATGTGGAGTGTATAAAAGGTTACACCCACATATGTTTACAAACAGTTCTAGTACCTACATGTATAGTCATATGCATTTACACTGCACATACAGTTTCTGTCTATCTGCAGCACATTGCTTCTTGTGTTCTGAATGGTACATGCCACCCATGAAAACCTTTTTGGATAGGAAGCAAGATTCAGAGCACATTTGTGTCAATAAAATATCCATATAGATTTTGATTATATAGATCTAGCACTACAAATCAGCAAGCATGATGTGGTGatcaaatgtgtgtttgtacatggtttctggtgttttgtttcagcTTTACTTTAGCTCTGAAAAAATCCTAGGATTTTGTAGTGATAAGCTACGGTGACAGAAATATATTCTGGCACAGACTTCAAAAGCACAGATAACTTCAAACTGTGAGACAATAAATGTGTGCCGAATCCCACATAAGTAGGGTAGGAAATAAGCTCAGACTAATCTGGGGTACTGGACAGCATTTCACAGTTTGACAGTCTTGATTTAGCTACAGCAAAAAACAGGAGGTAGCCGTACAGTCATACAGGGTCAATATTCTAGAGGGCTTTGTGCTACAGGGACCTCAGAAATCCTAAAAGCTGCAGAACATTAAAGTATGTGGGAACAGACTTGAACTCCCAGTCCTTAAATTAGTCCAACAGGAGATGTGCATCCCAAACGGAAATGGTCCAGTAAGGTTCCTTGCATCTCAATGGACGGTCTACGGTATTCCCCACTGCTCTGGATGGCACACTTTACCTATGTATCTAGGGGTAGAAACATCACATTTGAGTTCCACAGCCATGGGGTCAAGCACAGTGGGAGATGGTGACCACTGCATTGCACTCAATAGTCTAAATAGTGTGTGTTTTCAAGAAAGACAATTAAGGATGTTACGGAACTCTCAAAAAACGCCAGGCCTGGCACTTCCCATTTGCAAATGACAAACCCAGTACTGGTTGGTGGGTTTTCATTCAGTAGAAGGAAGAACTCTCCATCAAAGTTAAAGTGGGTCTGGGTCTCATTTGGTCTGGCCACATAACGGGTATGAAAACAGTGAAAgactgattttaaaacaaaatgatttctgGTCTGAGTTCTGGTTTTAAAGCCAGTTACTA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149903 lncRNA downstream 92530 25479010 ~ 25479524 (-) True G119600
TU149859 lncRNA downstream 238879 25262362 ~ 25333175 (-) True G119557
TU149749 lncRNA downstream 526710 25044951 ~ 25045344 (-) True G119466
TU149701 lncRNA downstream 729933 24836787 ~ 24842121 (-) True G119426
TU149635 lncRNA downstream 963592 24519413 ~ 24608462 (-) True G119382
TU149942 lncRNA upstream 12450 25590572 ~ 25656954 (-) True G119632
TU149947 lncRNA upstream 26909 25605031 ~ 25606144 (-) True G119637
TU149966 lncRNA upstream 140464 25718586 ~ 25718976 (-) True G119655
TU149986 lncRNA upstream 442105 26020227 ~ 26068649 (-) True G119672
TU149987 lncRNA upstream 498536 26076658 ~ 26078404 (-) True G119673
AMCG00018917 mRNA downstream 18962 25547542 ~ 25553092 (-) True AMCG00018917
AMCG00018916 mRNA downstream 38698 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018910 mRNA downstream 234001 25331301 ~ 25338053 (-) True AMCG00018910
AMCG00018911 mRNA downstream 256842 25303537 ~ 25315212 (-) True AMCG00018911
AMCG00018912 mRNA downstream 270352 25294104 ~ 25301702 (-) True AMCG00018912
AMCG00018920 mRNA upstream 18414 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018925 mRNA upstream 766508 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018926 mRNA upstream 789228 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018929 mRNA upstream 873602 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018928 mRNA upstream 1045702 26623824 ~ 26625548 (-) True AMCG00018928
TU149840 other downstream 384646 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 400410 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 494474 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 2765716 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3458359 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 1235358 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 1652751 27230873 ~ 27242574 (-) True G119893

Expression Profile