RNA id: TU149942


Basic Information

Item Value
RNA id TU149942
length 2011
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G119632
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25590572 ~ 25656954 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTTTACAGTTTAAGAGTCTTTAATTGCTgacatacatatttcaaattggTTAACCACCAATTTCAGGCTGGTGGTAGCTTGTTACAGTAATCTATAACATCCACTGCACTGAATTCCTCCACTATGGAGGGAGATGTTGCATCCCTTTTCAGTCTAAGCCACATTAAAGCAAAACCTGCCCTCTAACAATGTtaaactactttttaaaatgcagcaggACTTCAAAACCAGACTACTGCTTGAACCTGGatcctaaacttttttttttttgtgacaatTGGTAAGTACTAAACAAAATGGTCAACTTGCATAGTGTCTGTATATGATGGTGCACAAACACATTGATGAAACAATGGCTAAATTGCAGACAAATTGTGGAAGGTAGGCTTACAAGTCTGGTTACagatttcaactttttttttttcccctaaagcATCAGTGACAGGGTGGTCTTCAGAGgtcttttaaataactgttCCCTGAATTTCTGGAAGGAAATTGCAAAGATTGTAAGGGTTACATCTAGAATGAGTTGCAAACAAAAAGAGGAATTTAACTTATTTCAATTAACCATAGTTATGGAAGAATAGCTGTAGCTGTAGATTAGGTGATGCAAATATTGCACTGCAGCAAAAACCTTGGCAAAATACCCTGATTAACTTAAGTACATTTAAACCAGTATGACTACATGTAAATACTGTAATCTATAGAATACCTGCAGGACCTATGCTGAGGATTGTTTGGTAACATTTGGCAGGGAGCTCAAGTTTCACAGTGAATATAATACCATAACTAAGTTCTATTAAACAGTGCTAAAGTTTGAACATTAACAGCCATTGAAAATCACATGGTCCCTTTTTTCCCAATGCATAGTATATTGCTATTAACCAAGTCCATAAGGAGAGCATGGTGTTAATAGGTCAAGGCTCACACAGTAATATGGCTTTCAAATGCACAGTCCTGTAAATATACTGATGAGAATCACAGTTTAGTACAGCATAAACCCaaattacagaactgtacaGAATGAACATAAGATTTCACACAGTTACACACTCCTATAAATTCTCTGATTTactcaatatattttttacactgTTCAAAACCtctcatgtattatttatactatGCAGTCAATCAGAACACAATTtgttaaaatgacaaactgagctgtaagaaacacaaacattaagaAGGATAGATCTCTGGATTAAAcagatctatttaaaataatctagaGCAATGGTCCTCAACCATGGTCCCCTaccctgttgtttttgttccaactgagttctcaattacttaattgcacccttaattgaaataatgtgcttacattttactttttaaattgtgtaactgaaaaaatgttgtttcctaaataagataagttccttatacaattttaaactcaACATTAAACCCCtaaggtttaaaataattataagatttctgatttaggaaattattagttcaattaaggttcaattaagtaattgagaactcggttggaacagaaaacagcagggtagggggtcctcgaggaccagggttgagaacctcTGAGCTGGAGTACAcgttttattgattttttttaccCGCACCAACTGAATGAATTGCTTAAATTAAGGGGGATTGTCTGAACAAtagacaaacacaaagacacactgacactcagtTCCCTGTGCTTCTCTGTGATTCACAGTAACACCCCCCTTGTGCCGGGAAGGTGATGGTCCAGACTGTCTCGGTCTCTGGCCCCCCTGTGGACGTGGGGTGTCTCCAGCGTGACCACTAGGGATCATGCTTCTCTCCCCCGCCGTACACCCTGCGGAGGCTGGAGTCCAGGAGGTAGTCCACTGACCTGTTGCAGAAGACATTCGTACCTTTACAATAATCCTCCCCAGCTTTAAACACTGGggctgtctctctgtgtctcaatGCAGAACATGACTTTCTGTTTCAGCAAATATACAAGTCTCTCAGGTCTGGCAATATACTGCGTTTTT

Function

GO: NA

KEGG:

id description
ko00920 Sulfur metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149919 lncRNA downstream 12450 25572054 ~ 25578122 (-) True G119615
TU149903 lncRNA downstream 111048 25479010 ~ 25479524 (-) True G119600
TU149859 lncRNA downstream 257397 25262362 ~ 25333175 (-) True G119557
TU149749 lncRNA downstream 545228 25044951 ~ 25045344 (-) True G119466
TU149701 lncRNA downstream 748451 24836787 ~ 24842121 (-) True G119426
TU149966 lncRNA upstream 61632 25718586 ~ 25718976 (-) True G119655
TU149986 lncRNA upstream 363273 26020227 ~ 26068649 (-) True G119672
TU149987 lncRNA upstream 419704 26076658 ~ 26078404 (-) True G119673
TU150001 lncRNA upstream 455910 26112864 ~ 26113153 (-) True G119685
TU150009 lncRNA upstream 462468 26119422 ~ 26151071 (-) True G119691
AMCG00018917 mRNA downstream 37480 25547542 ~ 25553092 (-) True AMCG00018917
AMCG00018916 mRNA downstream 57216 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018910 mRNA downstream 252519 25331301 ~ 25338053 (-) True AMCG00018910
AMCG00018911 mRNA downstream 275360 25303537 ~ 25315212 (-) True AMCG00018911
AMCG00018912 mRNA downstream 288870 25294104 ~ 25301702 (-) True AMCG00018912
AMCG00018925 mRNA upstream 687676 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018926 mRNA upstream 710396 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018929 mRNA upstream 794770 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018928 mRNA upstream 966870 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018931 mRNA upstream 1076313 26733267 ~ 26771289 (-) True AMCG00018931
TU149840 other downstream 403164 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 418928 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 512992 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 2784234 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3476877 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 1156526 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 1573919 27230873 ~ 27242574 (-) True G119893

Expression Profile