RNA id: TU149947


Basic Information

Item Value
RNA id TU149947
length 829
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G119637
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25605031 ~ 25606144 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCAGAGGAAATagccttgaaataaataaagacttgaaAAGAAGGggtagaggaaaaaaaagttcaagATTGTTTCAAaggttttaattatgaaatcaCAAAAGTTGCACAACTATGAAACAAGTCCAGTCAGTCAGCAGTAAGCAGGCCCCTACTGCAGGTGTAACCCAGTCGGCCTCCCCTCCACATACACCGGTAGTAGCCTAGCCACAGTGCCCCCAGCAACATCAAGGGAACAACAAGGAAAGGCAGCCAGGTTGGGGATGAGCTCTCACCCTATGGCTCAGACAGGGCCTTTTTGATGGTGTGACTGTGCTCTCCAGGCTGCTCTTCATGATCGATCTTCACAGGCCCCAAAACAGTAGTGTAGGTCAGACCCTGGTCATCTGAGATGAAGAAGACATTCAGCTACTAGGGTGAAGGAGTTCGTACATCAACTTGCTCATGTAAAACACCTCCAGAACAGAAGTCAGGGTGCAAACTGGTGCACCATTGTACAACGGGCAAGGAGAGTCACAAAAATtgcctcattaaaaaaaaattaaacctgtTGATTTTGTGGACTCCTTTTTAATGCTGAAGCTCCAATTTCTCCTTGGAAGGAGAGGTTCAGGTTAGTGCACTTTACAGGGAGAGGGTGGAAATTCCTTCATGAGAGTTGGACAACCTCTCCAGTATGGCAGGGCAGCAGTGTGAGGAATACATCCTACCCATGCCTGCAGCTCGCTTCCTCCGCCGATTGCAGTTGGAGTCACAGCAGTTGCACAACCCATTCTGAGTGGGGGTTTCCAGAGACTCCCAGCTAGAAGTGGGGAGGGAAAGCAAAA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149919 lncRNA downstream 26909 25572054 ~ 25578122 (-) True G119615
TU149903 lncRNA downstream 125507 25479010 ~ 25479524 (-) True G119600
TU149859 lncRNA downstream 271856 25262362 ~ 25333175 (-) True G119557
TU149749 lncRNA downstream 559687 25044951 ~ 25045344 (-) True G119466
TU149701 lncRNA downstream 762910 24836787 ~ 24842121 (-) True G119426
TU149966 lncRNA upstream 112442 25718586 ~ 25718976 (-) True G119655
TU149986 lncRNA upstream 414083 26020227 ~ 26068649 (-) True G119672
TU149987 lncRNA upstream 470514 26076658 ~ 26078404 (-) True G119673
TU150001 lncRNA upstream 506720 26112864 ~ 26113153 (-) True G119685
TU150009 lncRNA upstream 513278 26119422 ~ 26151071 (-) True G119691
AMCG00018920 mRNA downstream 4368 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018917 mRNA downstream 51939 25547542 ~ 25553092 (-) True AMCG00018917
AMCG00018916 mRNA downstream 71675 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018910 mRNA downstream 266978 25331301 ~ 25338053 (-) True AMCG00018910
AMCG00018911 mRNA downstream 289819 25303537 ~ 25315212 (-) True AMCG00018911
AMCG00018925 mRNA upstream 738486 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018926 mRNA upstream 761206 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018929 mRNA upstream 845580 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018928 mRNA upstream 1017680 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018931 mRNA upstream 1127123 26733267 ~ 26771289 (-) True AMCG00018931
TU149840 other downstream 417623 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 433387 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 527451 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 2798693 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3491336 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 1207336 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 1624729 27230873 ~ 27242574 (-) True G119893

Expression Profile