RNA id: TU149981



Basic Information


Item Value
RNA id TU149981
length 828
lncRNA type sense_over
GC content 0.28
exon number 2
gene id G119669
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26039279 ~ 26078413 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aataataataataataataataataattattattattattattattattattattatataactaTAAATGGATATAGTTGTCCggagaaaaatagaaaagactTTGCATGTCCCGTCTTATCAATATCTTGATTCTGATTGCCATTTTCAATTCTTCAAACAAGACCAAAATATGGGAAATATCAAATATAAGATGGAACACACCCTCACGTAATgaatctgcaaaacaaaatacttcgTATGCTTTTTGCTTACCCCTGtgtatatgattttgttttttaatacatggacaaataaaaaataatctgaaaagaaaacaatgaaacaaattgaaacgtagactataaatatatatatatatatattcaaaaatatttatgtaattatttgctATTTCGTGTAAATATATCGGATTAGAATTTTTGAGATTCTGCCCttaatttattgttgttgtacatatatatgtgtaaatattgtCTGCGagttgttttggttttagtCTTCTGCATTTCATAATTCAGATCTGTCCTCAACTCTGCCACTATCAACGTGTTTCTCTCTGCAAAGAAAAATGTGCCATTGTAGATTTTACCATTGTCTCAGTGTTAAAAGTgctactgttaaaaaaaaaagtgacaacaCAGCGCACCAGTGGCTTAAAACGTGATGaagtttctctttctttatataaaacaactttatttgtgtgtcaataaaataatggattaaaaaaaaatccgtAGGTCTATTGCAGCTTGAAAGTAAAAGTGCCGaacttattaaaatatgaaggtttaatttgtgtttctaaAGTTGTCCTTGGGTTTc

Function


GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU149934 lncRNA upstream 321031 25714933 ~ 25718248 (+) False AMCG00018922
TU149876 lncRNA upstream 551130 25485845 ~ 25488149 (+) True G119574
TU149822 lncRNA upstream 701090 25331390 ~ 25338189 (+) True G119529
TU149814 lncRNA upstream 725784 25303186 ~ 25313495 (+) True G119523
TU149704 lncRNA upstream 1188229 24850836 ~ 24851050 (+) True G119429
TU149998 lncRNA downstream 29056 26107469 ~ 26107849 (+) True G119682
TU150000 lncRNA downstream 34459 26112872 ~ 26113131 (+) True G119684
TU150023 lncRNA downstream 197972 26276385 ~ 26276585 (+) True G119703
TU150076 lncRNA downstream 363780 26442193 ~ 26444060 (+) True G119750
TU150109 lncRNA downstream 484378 26562791 ~ 26563013 (+) True G119779
AMCG00018922 mRNA upstream 320853 25678677 ~ 25718426 (+) True AMCG00018922
AMCG00018921 mRNA upstream 396811 25628737 ~ 25642468 (+) True AMCG00018921
AMCG00018919 mRNA upstream 427942 25601919 ~ 25611337 (+) True AMCG00018919
AMCG00018918 mRNA upstream 446588 25584316 ~ 25592691 (+) True AMCG00018918
AMCG00018914 mRNA upstream 456885 25555456 ~ 25582394 (+) True AMCG00018914
AMCG00018924 mRNA downstream 75242 26153655 ~ 26193484 (+) True AMCG00018924
AMCG00018927 mRNA downstream 353303 26431716 ~ 26438313 (+) True AMCG00018927
AMCG00018934 mRNA downstream 794437 26872850 ~ 26875837 (+) True AMCG00018934
AMCG00018936 mRNA downstream 969353 27047766 ~ 27048707 (+) True AMCG00018936
AMCG00018935 mRNA downstream 970433 27048846 ~ 27049202 (+) True AMCG00018935
TU149874 other upstream 553833 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 771498 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 4850033 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 5283059 20755629 ~ 20756220 (+) False AMCG00018802
TU148663 other upstream 5435964 20601956 ~ 20603315 (+) True AMCG00018792
TU150090 other downstream 382207 26460620 ~ 26461227 (+) True G119762

Expression Profile