RNA id: TU149987


Basic Information

Item Value
RNA id TU149987
length 1720
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G119673
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26076658 ~ 26078404 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAACTttagaaacacaaattaaaccttcatattttaataagttCGGCACTTTTACTTTCAAGCTGCAATAGACCTacggatttttttttaatccattattttattgacacacaaataaagttgttttatataaagaaagagaaacttCATCACGTTTTAAGCCACTGGTGCGCTGtgttgtcacttttttttttaacagtagcACTTTTAACACTGAGACAATGGTAAAATCTACAATGGCACATTTTTCTTTGCAGAGAGAAACACGTTGATAGTGGCAGAGTTGAGGACAGATCTGAATTATGAAATGCAGAAGactaaaaccaaaacaactCGCAGacaatatttacacatatatatgtacaacaacaataaattaaGGGCAGAATCTCAAAAATTCTAATCCGATATATTTACACGAAATagcaaataattacataaatatttttgaatatatatatatatatatttatagtctacgtttcaatttgtttcattgttttcttttcagattattttttatttgtccatgtattaaaaaacaaaatcatatacaCAGGGGTAAGCAAAAAGCATAcgaagtattttgttttgcagattcATTACGTGAGGGTGTGTTCCATCTTATATTTGATATTTCCCATATTTTGGTCTTGTTTGAAGAATTGAAAATGGCAATCAGAATCAAGATATTGATAAGACGGGACATGCAAagtcttttctatttttctccGGACAACTATATCCATTTAtagttatataataataataataataataataattattattattattattattattattattattattattattattattattgtttctatCAAACAGCAGACTTTACAAGCTATACCAGAAGAGGTTTACAAATTGGCCAAACCAATCCAGCGTAAATCTTAAACTCGTTCTGTTTGTTCACCCAGCACCTAACATGTAAAAGATATATATCACATAGCAGCAACTTCATATgtcttttaattacaaatttctTAAGAATCCCTTTCCGTTTCAATACTTGTGTGGTATTCAAAATACAGACAAGTCCAGAGTACGTGTATATGTTTTAACACAAGAGAAATAGAGCGTacattaagttttttttttttttttttttttttaaacaaagtgcattggaaaaaacaaacaacaaataataattaaaaaaaaaaaaaaaacataatacacgGTTTGAGAGATCTGCAAATCCAAACCCGCTTTAgctacaaatgtattcattaaaggTTTTGTGTATCTTTCCTCTAAGGAGACACGCTTCGTGGCCGGTCTGGTTTTGAATCTAGTCCACTGACCAAACGTTGGATGCTTTGCAGTTCGTTGGTCGAGTCCTTTTCCGAACATGTTTTAGGCGATAGAGAAACGGAGCCCGATGATATAGTGGAGGACCTGCTGTTCACCTCAGACGTGGAGTCCAGGGTAGCCGACACCGGGCTTGTGGCCATGCTGTTGGCTTTGAGCTCCATGGCGCTGTTGACCATAGAGGGAAGGGCTGTGGTCAGCAAAGTGCTGCTGTCCGGTAGACTCATGGGGATTGAATAGGGGCTGTACCGCAGCCGGGGGCGCACCGCGTTCAGAAACGGGTGGCGGTGTACGGAGGAGGACGCCGCCGACGAGGCGGCCGCAGCTGCCGCCATATAGGTGTAAGGATAAGGGAAAAGGCTTCCGAATGGAGACATCGCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149986 lncRNA downstream 8009 26020227 ~ 26068649 (-) True G119672
TU149966 lncRNA downstream 357682 25718586 ~ 25718976 (-) True G119655
TU149942 lncRNA downstream 419704 25590572 ~ 25656954 (-) True G119632
TU149947 lncRNA downstream 470514 25605031 ~ 25606144 (-) True G119637
TU149919 lncRNA downstream 498536 25572054 ~ 25578122 (-) True G119615
TU150001 lncRNA upstream 34460 26112864 ~ 26113153 (-) True G119685
TU150009 lncRNA upstream 41018 26119422 ~ 26151071 (-) True G119691
TU150034 lncRNA upstream 241573 26319977 ~ 26343078 (-) True G119713
TU150088 lncRNA upstream 378977 26457381 ~ 26457825 (-) False AMCG00018929
TU150098 lncRNA upstream 382214 26460618 ~ 26461160 (-) True G119770
AMCG00018920 mRNA downstream 475995 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018917 mRNA downstream 523566 25547542 ~ 25553092 (-) True AMCG00018917
AMCG00018916 mRNA downstream 543302 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018910 mRNA downstream 738605 25331301 ~ 25338053 (-) True AMCG00018910
AMCG00018911 mRNA downstream 761446 25303537 ~ 25315212 (-) True AMCG00018911
AMCG00018925 mRNA upstream 266226 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018926 mRNA upstream 288946 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018929 mRNA upstream 373320 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018928 mRNA upstream 545420 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018931 mRNA upstream 654863 26733267 ~ 26771289 (-) True AMCG00018931
TU149840 other downstream 889250 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 905014 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 999078 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 3270320 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 3962963 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 735076 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 1152469 27230873 ~ 27242574 (-) True G119893

Expression Profile