Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009390 |
| length | 2023 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 9 |
| gene id | XLOC_004743 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 26467847 ~ 26487363 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016477 | cell migration | biological_process |
| GO:0010975 | regulation of neuron projection development | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0007020 | microtubule nucleation | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:0047496 | vesicle transport along microtubule | biological_process |
| GO:2000574 | regulation of microtubule motor activity | biological_process |
| GO:0051303 | establishment of chromosome localization | biological_process |
| GO:0007100 | mitotic centrosome separation | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0051642 | centrosome localization | biological_process |
| GO:0060052 | neurofilament cytoskeleton organization | biological_process |
| GO:0000776 | kinetochore | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005819 | spindle | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005871 | kinesin complex | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040115-2 | Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in immature eye; nervous system; and trigeminal placode. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1). |
| ensembl_id | ENSDART00000022495 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010742 | lncRNA | upstream | 963467 | 25502406 ~ 25504380 (+) | True | XLOC_004735 |
| TCONS_00009377 | lncRNA | upstream | 994641 | 25432626 ~ 25473206 (+) | False | XLOC_004734 |
| TCONS_00010939 | lncRNA | upstream | 1059327 | 25380168 ~ 25408520 (+) | False | XLOC_004733 |
| TCONS_00010741 | lncRNA | upstream | 1078256 | 25382277 ~ 25389591 (+) | True | XLOC_004733 |
| TCONS_00010740 | lncRNA | upstream | 1080177 | 25380137 ~ 25387670 (+) | False | XLOC_004733 |
| TCONS_00010940 | lncRNA | downstream | 1990 | 26489353 ~ 26491973 (+) | True | XLOC_004744 |
| TCONS_00010942 | lncRNA | downstream | 102281 | 26589644 ~ 26593298 (+) | False | XLOC_004748 |
| TCONS_00010941 | lncRNA | downstream | 102281 | 26589644 ~ 26593298 (+) | True | XLOC_004748 |
| TCONS_00010943 | lncRNA | downstream | 150764 | 26638127 ~ 26725781 (+) | False | XLOC_004750 |
| TCONS_00010743 | lncRNA | downstream | 204456 | 26691819 ~ 26692051 (+) | True | XLOC_004751 |
| TCONS_00009389 | mRNA | upstream | 6103 | 26435918 ~ 26461744 (+) | True | XLOC_004742 |
| TCONS_00009388 | mRNA | upstream | 30595 | 26434478 ~ 26437252 (+) | False | XLOC_004742 |
| TCONS_00009387 | mRNA | upstream | 519368 | 25945560 ~ 25948479 (+) | True | XLOC_004741 |
| TCONS_00009386 | mRNA | upstream | 585903 | 25845494 ~ 25881944 (+) | True | XLOC_004740 |
| TCONS_00009384 | mRNA | upstream | 637579 | 25775734 ~ 25830268 (+) | False | XLOC_004739 |
| TCONS_00009392 | mRNA | downstream | 4274 | 26491637 ~ 26494851 (+) | True | XLOC_004745 |
| TCONS_00009393 | mRNA | downstream | 25206 | 26512569 ~ 26525699 (+) | True | XLOC_004746 |
| TCONS_00009394 | mRNA | downstream | 51498 | 26538861 ~ 26547248 (+) | True | XLOC_004747 |
| TCONS_00009395 | mRNA | downstream | 121520 | 26608883 ~ 26611971 (+) | True | XLOC_004749 |
| TCONS_00009396 | mRNA | downstream | 134543 | 26621906 ~ 26726048 (+) | False | XLOC_004750 |
| TCONS_00009383 | other | upstream | 819604 | 25648127 ~ 25648243 (+) | True | XLOC_004738 |
| TCONS_00009380 | other | upstream | 989941 | 25468312 ~ 25477906 (+) | True | XLOC_004734 |
| TCONS_00009372 | other | upstream | 1216060 | 25223799 ~ 25251787 (+) | False | XLOC_004732 |
| TCONS_00009364 | other | upstream | 1902255 | 24565478 ~ 24565592 (+) | True | XLOC_004724 |
| TCONS_00009361 | other | upstream | 2049507 | 24418224 ~ 24418340 (+) | True | XLOC_004723 |
| TCONS_00009419 | other | downstream | 647506 | 27134869 ~ 27134967 (+) | True | XLOC_004762 |
| TCONS_00009421 | other | downstream | 669580 | 27156943 ~ 27163064 (+) | False | XLOC_004764 |
| TCONS_00009426 | other | downstream | 731630 | 27218993 ~ 27220589 (+) | True | XLOC_004765 |
| TCONS_00009428 | other | downstream | 743932 | 27231295 ~ 27234421 (+) | False | XLOC_004766 |
| TCONS_00009459 | other | downstream | 2458169 | 28945532 ~ 28945646 (+) | True | XLOC_004786 |
