RNA id: TU150098


Basic Information

Item Value
RNA id TU150098
length 522
lncRNA type intronic
GC content 0.48
exon number 2
gene id G119770
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26460618 ~ 26461160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagagcttgattttgatctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcattggcaaacttcagacgggcctgtacatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgcgttaccaattgttttcttggttactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccaagggagactgacagttattttgtgtttcttccgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagctttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccaaggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150088 lncRNA downstream 2793 26457381 ~ 26457825 (-) False AMCG00018929
TU150034 lncRNA downstream 117540 26319977 ~ 26343078 (-) True G119713
TU150009 lncRNA downstream 309547 26119422 ~ 26151071 (-) True G119691
TU150001 lncRNA downstream 347465 26112864 ~ 26113153 (-) True G119685
TU149987 lncRNA downstream 382214 26076658 ~ 26078404 (-) True G119673
TU150103 lncRNA upstream 39841 26501001 ~ 26501920 (-) True G119774
TU150156 lncRNA upstream 316475 26777635 ~ 26779240 (-) False AMCG00018930
TU150157 lncRNA upstream 316475 26777635 ~ 26778640 (-) False AMCG00018930
TU150161 lncRNA upstream 349724 26810884 ~ 26812556 (-) True G119825
TU150162 lncRNA upstream 351954 26813114 ~ 26813426 (-) True G119826
AMCG00018926 mRNA downstream 49833 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018925 mRNA downstream 104010 26344630 ~ 26356608 (-) True AMCG00018925
AMCG00018920 mRNA downstream 859955 25596536 ~ 25600663 (-) True AMCG00018920
AMCG00018917 mRNA downstream 907526 25547542 ~ 25553092 (-) True AMCG00018917
AMCG00018916 mRNA downstream 927262 25489444 ~ 25533356 (-) True AMCG00018916
AMCG00018928 mRNA upstream 162664 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018931 mRNA upstream 272107 26733267 ~ 26771289 (-) True AMCG00018931
AMCG00018930 mRNA upstream 316579 26777739 ~ 26797720 (-) True AMCG00018930
AMCG00018933 mRNA upstream 364102 26825262 ~ 26825957 (-) True AMCG00018933
AMCG00018932 mRNA upstream 383610 26844770 ~ 26869193 (-) True AMCG00018932
TU149840 other downstream 1273210 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 1288974 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 1383038 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 3654280 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 4346923 22080464 ~ 22113695 (-) True G118936
TU150163 other upstream 352320 26813480 ~ 26814073 (-) True G119827
TU150237 other upstream 769713 27230873 ~ 27242574 (-) True G119893

Expression Profile