RNA id: TU150163


Basic Information

Item Value
RNA id TU150163
length 594
RNA type TUCP
GC content 0.58
exon number 1
gene id G119827
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26813480 ~ 26814073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCACGCCGGCTGCCACGCCAGCTGCCACTACTGCACCTGCCGCGGCAGCCGCACCCCCTGAGGCAGGCCCTGTGGGgggccctgtccgtacacccattgtgtgtccgttttgccggagatggctccagggtcacactacggcctaaccctgcattcctcacgaaagtgctgtctccattccatgtcaacaggcctattgagttgatggcttttcatcctcctcccttcgcttcagagcaagagagtcggcttcacctgctctacCCTGTGCAGGCCCTTGGGTGCTATTTGGAActcactaaggacattcggcgcacagaccaactgtttgtgtcttatggagcgcggacacagggccaggcaatTTCAAAACAGCGCCTCTCgtattggattgtggacaccattaccatggcctacaagtccacctggaccccggtgcctgaacacctggtagtccactcgactcgaggcgttgccacatgttgggccctttttcaaggcgccctcttggcagacatttgtgcggctgcggCTTGGACTttgccgcttacatttgtccggttctacaggttggacgtgatgggaccggtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150162 lncRNA downstream 54 26813114 ~ 26813426 (-) True G119826
TU150161 lncRNA downstream 924 26810884 ~ 26812556 (-) True G119825
TU150156 lncRNA downstream 34240 26777635 ~ 26779240 (-) False AMCG00018930
TU150157 lncRNA downstream 34840 26777635 ~ 26778640 (-) False AMCG00018930
TU150103 lncRNA downstream 311560 26501001 ~ 26501920 (-) True G119774
TU150235 lncRNA upstream 408433 27222506 ~ 27278009 (-) True G119891
TU150257 lncRNA upstream 541752 27355825 ~ 27356032 (-) True G119912
TU150274 lncRNA upstream 651314 27465387 ~ 27468649 (-) True G119929
TU150289 lncRNA upstream 692435 27506508 ~ 27507199 (-) True G119944
TU150290 lncRNA upstream 704539 27518612 ~ 27519715 (-) True G119945
AMCG00018930 mRNA downstream 15760 26777739 ~ 26797720 (-) True AMCG00018930
AMCG00018931 mRNA downstream 42191 26733267 ~ 26771289 (-) True AMCG00018931
AMCG00018928 mRNA downstream 187932 26623824 ~ 26625548 (-) True AMCG00018928
AMCG00018929 mRNA downstream 328165 26451724 ~ 26485315 (-) True AMCG00018929
AMCG00018926 mRNA downstream 402695 26367350 ~ 26410785 (-) True AMCG00018926
AMCG00018933 mRNA upstream 11189 26825262 ~ 26825957 (-) True AMCG00018933
AMCG00018932 mRNA upstream 30697 26844770 ~ 26869193 (-) True AMCG00018932
AMCG00018938 mRNA upstream 58821 26872894 ~ 26943014 (-) True AMCG00018938
AMCG00018937 mRNA upstream 128991 26943064 ~ 27063981 (-) True AMCG00018937
AMCG00018940 mRNA upstream 403089 27217162 ~ 27224946 (-) True AMCG00018940
TU149840 other downstream 1626072 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 1641836 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 1735900 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 4007142 22804345 ~ 22806338 (-) True G119144
TU149076 other downstream 4699785 22080464 ~ 22113695 (-) True G118936
TU150237 other upstream 416800 27230873 ~ 27242574 (-) True G119893

Expression Profile