RNA id: TU150170


Basic Information

Item Value
RNA id TU150170
length 4403
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G119834
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26844689 ~ 26849498 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccatgtttgtttttttatttttttattttcaacaattttcTTAAAGGAAAAAGGGAGTAAAGTGGGGAGGGtcaatagttaaaaaaaaaaaaaaaaaaaaaaaaaaactttacagcTCGTCACAAGGTTTCACAATACACCTTCCACAATCTGCTGTCTGTACACAAGTAAGCATGCGTTCGGCAGTTcttgttttcttacattttatcagaacccaaaacaaaaataaacaaaccgaAGCTATTTAATTTGGAATCTATTAACAGTAGCAATGAAATAATTGTGGAAAAAAATCCCATAATGATAGCCTTATAAATATGGAATTATaaatttaaaatttgttttaaaaataaatcctgtatTAAATGGGAATTCCTGCAAATGGACTGTACTTCAATAAGGTCGATCACGGCGCTCCTGGCGGTGGTCCGGTCTTCTCAATTTTGCCTGGGGGTCCTACGCCTCTCCTTCCACCTCGGCCACCCATCTGATCCATGGAGGGCCCTCCACGGTCCATCCCCCTGCCACCGCGCATACCAAGGCCCCCTCTGCCTCGGTCACCACCTGCAAACCATACAAAAGTGTTGCATTAACTCACAGCCCAGGACTAATCTatgcataaattaaaatgcaaatctgtgAAACAGTCAACTGTTTTTTCAACATATCAATTTTTAAGGGTTTGGGGGCATGATTACTTTGTAGGAAGCAAGTTATATAATGCTTTTGGGTTATCCACACCAgcttattttacataaatgtacCCAACCTTCAGTTGTATGATGTGAAAGGAATCATTACCTGGTGGGGGAAAGGGGGGTGGGACAAATCCTTCAGGTTTGGGAGCTTTGCACTGATTACATTCCATCCTCCATGCAAAGTTCTGGTTCCCACAtccactaaagaaaaaaaaacaaaaacattaatacaagtTGAAAAGTTGAATACCATATTAAGCATCTAATGCCCAGTTTCCACTAGCCACACTGAGGTGCACTTCAGTGCGGCCGTTTGAGTCCAGGGCATTTCCACTTTGGCCCAGGTGCACCTCCACCTGTGACCAGAATAGTTTCAGGAAGCACTGTTTCGTACATCGTACAGGCAGAGTCTCAAACTGGTCTGGGGCAAATGTGGATACATCATTTACATAGACTTAACgccactgcattttgaaattgtaactatACTCATCTGGAATTCTGTgaacagttctgggctccacacttcaagaaagatattgctgttctagaggcagttcagaggagagcaaccagacttattccaggtttgaagggaatgtcctaataggagagactgagggaactgaaccttttcactctagaacagagaagactatatggggacttcaaaatcatgacgggcattgaccacatcaaaccagaggagcttttcatgatcagcagggacacacggaccagGGGATAtaaatgccttgaagctcaatttccattcgagaaaaaacaggagacacttcttcacacacacaggcgtcacaatctgaacaaactccccagtgatgtgattgaagctgaaaatttggcaacatttaaaaatagactggataggatctttggctcacttagttattaatggacagctaacgagcacaatgggtcgaatggcctcctctcgtttgtaaacttatgTTCTTACAATAATGGTGGCCTCCATTGATGCGAGATACTACAGAAACTTTTCCCAAGGAAGAATGTGTTTGTAtggaaagtgccacacaggatcaactgcatttaaaagtgtttgaaaagtctgcaaaaatcctgctggagaaaggactgctCAGACTGCAATAGTGTGctgtgacaaaatacattaacatttttgtgaaaGACTAAGGTGACCGTAAGTcttggatttaaattaaatgtcccaaTGTCTTGACAATTCTCTCAAAATAGTTTGAATGCCCCAGTTTTTAACTTTCCCGTTTACACtcttaaaactattacaaaTCTTAAAAAGCCAGGCATGTTTTTGTGATCAATCGCACGAAGGGGGGtgtattttaatctgtaaaccCTCATTACAAGTAATtatgtatactactactactactactactactactactactagcatAATGGTAATCCTAGTATAGATGCTTTCCCAAATGCAGAAATGCATAACTACCTTGTAAAAATAGCGGATTAATAAAACCACTACCTGATCCATTACAGTGTCAggacaagttttttttttttttaacccacaGAGGACTAAGACCCAGGGGTATAGAGCTAGAGGACTAGCGGGGCAATTTtcagcataaaaaaaacaccccctTTTTACAATATCAGAGATGTTTATTGAGAGAATGAAccattcaaaaagcttttaaaacagagggtttgtattggttaaaaatGTTAGAGAAGACAAGAAAAGATGGCGATGCACTGAAAATGCTCACTACATCAGAGCGGCTTTTAAAGGAGTCAAAtgggggatgttttgaacattttattactTCTGATACCggtaaaactaaacaaatcttttagtattgtaaacttttaatttggcacattgATTAGTACTGTACACAGTTATGACAGTGATTTGGAAGAGGGGAGGCAGAAGTTTATCACGTGAATGTAAATGTGAGGTGGTGACGGTGCAGATTAAAAGTTTCTGGTTTATTTCCGCTGATCAACCCATATGTCAGAATCACCTATTCAACACAAACGGATAAAGGATACGTCTACACAAAAGAAAGCTGGtaagattaatacaaaaaaaagtaagtcTATTTCTCCGCAAAGGAGAAAGATCATATCTGCCCCGAGCCGAACACACgcgtttacaatcaatgcaaagtaagcaatgtacatttattattagtagtagtagtagtaattaaatattactggtagtaataacgccaaaatctgtacattttgaagatgcttttatatttattcaacacacagcaccaTCTACAGACCATCCAATTAGTTTCATTTGTGTGGGTTTGTGGTGTAATTCTGACTAGTTTCTAGACAGGTGCACTACTTGCAAAACTTATATCTCTTGaacaagtatttgtaaacatctgtttttttttttaattttaaaatacccagaatgttatttcatatgaatgatttcttaagtgtttataagccaggttaattctgaaaactgggttgttttgaaaataaaaatggcatctttataagttttgtttctttgccaatgcacatttctgtattcattccaaaaattaattttagaagaatgaaaaatgacCAGGTGTCTTATAtttgtgatatataggtttcatattatgcttatatgtatttatataaaattaagtaatttgctgttCTATGTTAAGCACTGAGATTTTTTTGAGCACTCTAGGGCTCATGCGTAGAGCACCCCCTGTGGGCCTAGTACTCTGAGGGTTAAAggaatcacattaaaaaaaatggatgcCTCGCACAATGTTACTgatgtgtgattaatttatttagcaagATTGATTTAGCTCATGCAagttatacagaaaaaaaacgtAAATGCTAATACCATATTTGTGAAAAAGTTATGCATCCCAGAGTGCTGTAGccgtatttatatataaatgtattagttgTTCTTAAACTACATATATAGGCTGTGACTACATTTCGTACTGTACATTTCATGATATGCCAAGTGGCTACACAGaacagatttaaaacacatgTGCACTTGAACAATGCAACGCAGTTTAATTGTCctgcaaagaaataaaggaaaatatctaggatacttaaGTTcagctatattgtcaatgttaaaaCTAGATGAAACTGGAGCAGCTGTGtggaaattaatataattttctaaCAAATACTAACATGgtttaagtgatgtaattttgttttataaatattttttcaatatgtcctggtttctacttttgaatatctggtcaCCCTATAAGACtgttagatatcgtaaaaaaagtgcaataaaaattAAGGTATTTCAGCACTAAATACCAGAATGCATTCTGACCTTTTATGTCTCACACTCACTTCCTAGGGCAACTGTACCTTACGAAAATGAATGGAAACGCTGGCAGCAAAGTTTAGGTGTACAGTTACAGCCCAGCCATGCAGAGGTGCACCTAAACGTGGCCAGTGGATATGTGGTATAATTGGTTTCACTGGAGGTGGAGTAGCGGCAGACAACTATcaattaaaaaggtttttacAGAAGTTCAGTTTGACTCACGGGTTGGGGCACTGCCAGTCTCCAGCTCTTTGCTGCATATTGCCACCTGAAGGACCTCCTCGTCCAACTCCGCGAGGTCCCCCGCGAGGCATGAAGCCACCTCTGTCACCACCTCGGCCACCTGCACCTCGGCCCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150155 lncRNA upstream 18097 26825215 ~ 26826592 (+) True G119820
TU150151 lncRNA upstream 66029 26777653 ~ 26778660 (+) True G119817
TU150150 lncRNA upstream 68490 26775743 ~ 26776199 (+) True G119816
TU150116 lncRNA upstream 211972 26632502 ~ 26632717 (+) True G119786
TU150109 lncRNA upstream 281676 26562791 ~ 26563013 (+) True G119779
TU150172 lncRNA downstream 128 26849626 ~ 26855442 (+) True G119836
TU150242 lncRNA downstream 431508 27281006 ~ 27281572 (+) True G119897
TU150286 lncRNA downstream 664821 27514319 ~ 27515546 (+) True G119941
TU150285 lncRNA downstream 668766 27518264 ~ 27519750 (+) True G119940
TU150317 lncRNA downstream 821135 27670633 ~ 27670834 (+) True G119963
AMCG00018927 mRNA upstream 406376 26431716 ~ 26438313 (+) True AMCG00018927
AMCG00018924 mRNA upstream 651205 26153655 ~ 26193484 (+) True AMCG00018924
AMCG00018923 mRNA upstream 767427 26065643 ~ 26077262 (+) True AMCG00018923
AMCG00018922 mRNA upstream 1126263 25678677 ~ 25718426 (+) True AMCG00018922
AMCG00018921 mRNA upstream 1202221 25628737 ~ 25642468 (+) True AMCG00018921
AMCG00018934 mRNA downstream 23352 26872850 ~ 26875837 (+) True AMCG00018934
AMCG00018936 mRNA downstream 198268 27047766 ~ 27048707 (+) True AMCG00018936
AMCG00018935 mRNA downstream 199348 27048846 ~ 27049202 (+) True AMCG00018935
AMCG00018939 mRNA downstream 224298 27073796 ~ 27075433 (+) True AMCG00018939
AMCG00018942 mRNA downstream 352454 27201952 ~ 27202650 (+) True AMCG00018942
TU150090 other upstream 383462 26460620 ~ 26461227 (+) True G119762
TU149874 other upstream 1359243 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 1576908 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 5655443 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 6088469 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile