RNA id: TU150172


Basic Information

Item Value
RNA id TU150172
length 4187
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G119836
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26849626 ~ 26855442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCACGTCCAAGCAGCCCCCTCCCATCTCGAGGGAGAATACCCCCACGCATCAGCCCCATCAGAGGCTTCCTCCGAGCCATGGATACCTTCAGTTTCTTCCCTTGGAAATCTTTGCCTGGGAAGGAAAAATGATTCAATACAAGCTGGATCTATGGCACTTACTATTCAGTCAGTTCAACATTTCATAAAAAGCTGTTCGAAgacttttgttttcatcagtatTTGCCAGCAGTGTGGCAGGAAGGATTAACCTCACATTGGAAGTCAAGGAAAACTGCCCAGAAACATTAGCAGGGCAAGACAACCTATAACAAAGTGGGAACACAACAGGTTAGTCagcaatgtacattttatataaagaagGCTCCTCATCACGAGATGCATCAATGGAAAGATAcagcagtggaaaaaaaaaaaaacataccatcAAACCATTCTACTGCAGCTTTTGCAGCAGGGGGATCTTCATAGGACAGTGTGGCATCACCCTTTGGTTTCCCAGTTTCCTTATCTGTGTAAATGTTAACTGCAGGCTGCCCTGTTCTCTTGTTAACCTAATGATTCCACAGTGCTTAAAGAAGTCTGCAACTTCAtccaatgttacattttcacaaagccCAGTAACATAAATGGTACTGTTTTCAGAGTCATCTATTTCTTCAGGAACAGCTGCAaggacaagaaaacaaaggtttagtgtaaacacacacacttttattttgtgtaagtcATTACAATAATTCCAGGGAGGCTGtcatttaaatctttaaaacacagcaaaaaaattaatattCAGTTACTATTAAAACGCATCAAATGTCAATTTTCCATCAGTAATTTAAATACTGCAGTTCATGTAAAACATTACATGTTAAATTCtaagcaacaaaaataaaatacccatTTCAGGCTCTGGTCCATCACTCATGGGCCCTATTTTTCGtgaaaggggaaagaaaattaagaatTTAGAGGGCATTAATGAACAAAACCACCTAAATAAATGTCTTCCTATGTGCATTTACCCAGGGTCACTTGCTCATCTGAGCATTCTCAGGCACTCAGAAGTAAAACCTTTGagcattcatgttttaaatcatttttttccccttttgtcaGGACATCTAAATTAAGCTCTCAAATACCTTTATTAAAATTACTAAATTCTACTAAATGACATTACAAATTTCCAATACACAGTTAAATATAAGATGAGCCATTTAAAGTGGCCCCAAAACCACTAAAAACCCACTATTATACCAGGGGTTCAAAAGGGAATCCATCCTAAAACAAGGGTCTCTTAAAATTCAAACCAGTTCTCATTGTACTAATATGCAATGTGACAAGACACTAAATtcacttaaattattttagtttgtgtgaAACAGCATACTTTGCATTTCATGGTTTCCTTGGTTGTGACTGATTTActccatttaaatataatagaggggggaagaggaggaaaacaaaaccaaacaaaaaaaaccttaccCCTTGTGCTTGGTAATTTTACCTTGCCCTGAAAGCCTAGTTTGAACCCCTTATTTATACCCAACTTTATGGCCGGCAGTACACTTAACTAGAAAAACTTTACACCAATgcaagtgtatatatttttaaaagtggatttactattttcttttctttttactagCCAGTGTAATACTCAAACTTACCACCAGGCTTAATGAAGCCACCTCTGTCTCCAGCGATGCTGGGGAAATAAACGGAGAAATGAAGGCGATTTTCCCTTAAAGAGCCAGTTCCGTACCTCGAGCCCAGGGAGCTCGGTTGGGAGTGGACACAGTTCTGGCTAGGTATTTCAACAACCCCAAGTGACAGATTAACATAGGATTGCGGATCTATTACATGTGGTGATTGATTGGGGTTTGGCTTTTTCCATGTTCCATTCAAGTCATTCTTCAAAAAGGGGAGTAACTGGACAGTTtgaagtttgtgtgtgtatatgtgtgtgtgtgtagggggagggggagattGGGGGTCATCTTTATTACCATCTGGGTTTAAAACCCTGCATTTAATACATCataaaattgtttatttcagaTGCAGCTTTTTTATGACTCTCCCTTGACCCAAATTAATTGTACTATAGAGTACTGCACTCAAACACTGACTTACTTTATACATTATGAAGTATAATAAGGAGGAAACTAAAAGGTACACCAGGGATATTTTTaaggggggtggtggtggggagaATTCTGATGCAAAACAGttaaacaagtaaaacaatGCTGACAAAGTTTGATTTATGGGAATCAACTGGCATGTTTAGACTGTACCTTCATAAAAAAGCtgcaccaaaaataataattacaatttgaGCTGATACatgcagcttttaaaatgaaaatacaccatttacactttttttttttatacaaaaggTTAAAGTTACACAATTCTAACATACAAATACCTTGCATAAAATGGATTACATAAtccatcatttttaaattacatgttttaaagatacaatttcacatttcacagatttaaagACATCTCCATCTATATGCAGACACCGCTTTCATTATGCTGCTGGTTCAGTACTGAGTACAGGTACTTTTAAAGTATTGGTGTATACATGGCTCTCACTTTGTAACCTGTAGCATATAAATGCGACAAAGCATGTTAAAAAGAGTGTTCAAGTTCAAGAGtaattttacataatacatatgcAATGCAACGGCATTTCAAAACCACATTGTTTCTCCTTACCTGTGCACTATCCAAGGTGAAAGCATTCTCCAATAAAGAAAGACTTGGGAAAAGTCCTTGCCTCTTTCTTGTAAATCAAAACTATCCCCTCTTGCTAGGTAGTTATAACCAATATTTTCACAATACTGGCTCTGTGTATGTAATCGATTGGATGAATACTCAATTGGAAGTTCACAACTTATTTTGATAGTCATTTTGATTCCTCATACACTCCCAGACTTTAAGAATGTAAGCAAAATAGGCTGATGAGAAGTCAACATACAAAAAGCTGTTTGGGAAAGggatttataaaaaacaaaaaaatgctttcaccTTTTCAATTATCAAAATTCATCCCCTCCTACTTTCAGGGAAATGTAGCATTCAGGAAACCCCTTTAGTCTAtagtttacatattttaatgtctacaactgctgaaaaacattctataaaaatatattttggttaaAGAATTAAGTAATGGGCAATTACACAACCCTATTCCTGAAGGGGTTCCActtatttctgtattacatacctacagacattttaaacatgcaggATGCTACAGCAaagcattgtttaaataaaacctttcatgACACAGCTGAGGACTTCAAAAATCCATCTTTAGGCATCCCCATCGCAAAATAACTTACCTTCTACATGACCTGAAAAGCTACAAAGTCAGATTAGGACAATGGTAACAAATGGTGCTGCAGGCATTCATCGGTagcaattaatgtatttttcaagttCCACCCTCTTGCATTGCATAGTAGCATCCTGCATATCAACCTGAACATGAGCTGGGGCAAACATTAACCAATACGATTCTGTAATACATTATGTTTAATTGTtgccattcaattattttgaaatcaattaTACAGAAGTGCTACAAAGTCTCTCAAAGCTGGAAAACTGCAAGAATATTTTGCAGCAGTTAAGGAGGATACTACTAGGGAGACTTTGTGCTTACTCCAGCTCTTCAACCAATGTTGCCTTACTGAAGGTGGGTTGAAATGACCATAGGTGCAAATGTCTATAAATGACCTTCTAGTATAATCCAATACTCTTTAATAAGTATAGCAATTTCAATTCTAACTTACTGTGGAGGAGggcatgtttacattttaaggcAAGGTGGCCTGATCAGTGCTAAAGATATATAATGCTTAAACTCCTAACCACTCCTTTCAGCTTAATAACTCATGTTCCTGTGGATTTAAGGAGCGAGTACAAAAATTAAGGTGCGTCCTTACCCCATGCCTCCACGGCCCATTCCCCCTCGACCTCCTCCTCGGATTATGCCACCCCTGTCGAAGCCACCTCTTCCACGGGCCCGGCTCTCTGCCCCTCCCATACCTCGACTCTCACCAGGACCTGGGAAACTGCCAGGTTCTGACCCGGAGAAGCCACTACTTATGTTGTTAGGGTGATCCTGCCTATAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150170 lncRNA upstream 128 26844689 ~ 26849498 (+) True G119834
TU150155 lncRNA upstream 23034 26825215 ~ 26826592 (+) True G119820
TU150151 lncRNA upstream 70966 26777653 ~ 26778660 (+) True G119817
TU150150 lncRNA upstream 73427 26775743 ~ 26776199 (+) True G119816
TU150116 lncRNA upstream 216909 26632502 ~ 26632717 (+) True G119786
TU150242 lncRNA downstream 425564 27281006 ~ 27281572 (+) True G119897
TU150286 lncRNA downstream 658877 27514319 ~ 27515546 (+) True G119941
TU150285 lncRNA downstream 662822 27518264 ~ 27519750 (+) True G119940
TU150317 lncRNA downstream 815191 27670633 ~ 27670834 (+) True G119963
TU150408 lncRNA downstream 1059400 27914842 ~ 27915123 (+) True G120029
AMCG00018927 mRNA upstream 411313 26431716 ~ 26438313 (+) True AMCG00018927
AMCG00018924 mRNA upstream 656142 26153655 ~ 26193484 (+) True AMCG00018924
AMCG00018923 mRNA upstream 772364 26065643 ~ 26077262 (+) True AMCG00018923
AMCG00018922 mRNA upstream 1131200 25678677 ~ 25718426 (+) True AMCG00018922
AMCG00018921 mRNA upstream 1207158 25628737 ~ 25642468 (+) True AMCG00018921
AMCG00018934 mRNA downstream 17408 26872850 ~ 26875837 (+) True AMCG00018934
AMCG00018936 mRNA downstream 192324 27047766 ~ 27048707 (+) True AMCG00018936
AMCG00018935 mRNA downstream 193404 27048846 ~ 27049202 (+) True AMCG00018935
AMCG00018939 mRNA downstream 218354 27073796 ~ 27075433 (+) True AMCG00018939
AMCG00018942 mRNA downstream 346510 27201952 ~ 27202650 (+) True AMCG00018942
TU150090 other upstream 388399 26460620 ~ 26461227 (+) True G119762
TU149874 other upstream 1364180 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 1581845 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 5660380 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 6093406 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005826 True 6012 lncRNA 0.39 2 NC_007121.7 7978517 ~ 7984582 (+)
grasscarp (Ctenopharyngodon idella) CI01000304_06547442_06555032.mRNA True 2338 mRNA 0.53 15 CI01000304 6547442 ~ 6555367 (+)
striped catfish (Pangasianodon hypophthalmus) TU322741 False 4867 lncRNA 0.38 3 NC_047611.1 20442699 ~ 20447678 (+)