RNA id: TU150237


Basic Information

Item Value
RNA id TU150237
length 1290
RNA type TUCP
GC content 0.52
exon number 4
gene id G119893
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27230873 ~ 27242574 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAATAGCTGAAGTCTCGCAGCTGAACAGAGATGGAGGAAGGGGTACCAGCCCTCCCAGTGAAGAATCTCACTGGCTCTGGGCCGGTTCATCCTGCTCTGGCAGGCATGACAGGCATCCTGATGTGTGCAGCCGGTCTGCCAGTGTGTCTGACTCGCGCCCCCAAGCCCATCCTGCACCCGCCACCTATCAACAAAAGCGACATGAGGCCTGTACCTGGGGTCAACGGCATCCGACGCAAAACCAAGAAGAAGCACCTGAAGAAAGgacctctcaagctccatcaggttggatggggagcgtcggtgcacagccattttcagatctctccagagatgttcaatcgggttcaagtctgggctctggctgggccactcaaggacattcacagagttgtcctgtagccactcctttgttaacttggctgtgtgcttagggtcgttgtcctgttggaaaataaaccttcgccccagtctgaggtccagagtgctctggagcaggttttcatcaaggatgtctctgtacattgctgcattcatctttccctcaatcctgactagtctcccagttcctgccactgaaaaacatccccacaggatgatgctgccaccaccatgcttcacagcagggatggtattggccaggtgatgagcggtgcctggtttcctccagacatgacacttgccattcaggccaaagagttcaatctttgtttctcatggtctgagagtccttcaggtgccttttggcaaactccaggcgggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccatacaggcctgattggtggagtgttgcagagatggttgttcttctggaaggttctcctctctccacagagacacgcaggagctctgtcagagtgaccattgggttcttggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggcggccagctctaggaagagtcctggtcctgtgctcattgggaccttcaatgctgcagaaatcgTTCTGTACACTtcccccagatctgtgcctcgatacaatcctgtctcggaggtctacagacaattccttggacttcatggcttggtttgtgctctgacatgcactgttaactctgggaccttatatagacaggtgtgtgcctttccaaatcatgtctgaatcaactgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcagtggaaacaggatgcacctgagctcaattttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150162 lncRNA downstream 417447 26813114 ~ 26813426 (-) True G119826
TU150161 lncRNA downstream 418317 26810884 ~ 26812556 (-) True G119825
TU150156 lncRNA downstream 451633 26777635 ~ 26779240 (-) False AMCG00018930
TU150157 lncRNA downstream 452233 26777635 ~ 26778640 (-) False AMCG00018930
TU150103 lncRNA downstream 728953 26501001 ~ 26501920 (-) True G119774
TU150257 lncRNA upstream 113251 27355825 ~ 27356032 (-) True G119912
TU150274 lncRNA upstream 222813 27465387 ~ 27468649 (-) True G119929
TU150289 lncRNA upstream 263934 27506508 ~ 27507199 (-) True G119944
TU150290 lncRNA upstream 276038 27518612 ~ 27519715 (-) True G119945
TU150307 lncRNA upstream 328680 27571254 ~ 27572829 (-) True G119956
AMCG00018940 mRNA downstream 5927 27217162 ~ 27224946 (-) True AMCG00018940
AMCG00018937 mRNA downstream 166892 26943064 ~ 27063981 (-) True AMCG00018937
AMCG00018938 mRNA downstream 287859 26872894 ~ 26943014 (-) True AMCG00018938
AMCG00018932 mRNA downstream 361680 26844770 ~ 26869193 (-) True AMCG00018932
AMCG00018933 mRNA downstream 404916 26825262 ~ 26825957 (-) True AMCG00018933
AMCG00018947 mRNA upstream 57016 27299590 ~ 27371370 (-) True AMCG00018947
AMCG00018948 mRNA upstream 139429 27382003 ~ 27396226 (-) True AMCG00018948
AMCG00018946 mRNA upstream 310852 27553426 ~ 27567410 (-) True AMCG00018946
AMCG00018953 mRNA upstream 565568 27808142 ~ 27841558 (-) True AMCG00018953
AMCG00018952 mRNA upstream 620211 27862785 ~ 27878157 (-) True AMCG00018952
TU150163 other downstream 416800 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 2043465 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 2059229 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 2153293 25075398 ~ 25077580 (-) False AMCG00018898
TU149337 other downstream 4424535 22804345 ~ 22806338 (-) True G119144

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2324 True 3085 lncRNA 0.43 2 NC_048565.1 2114346 ~ 2117514 (-)