RNA id: TU150285


Basic Information

Item Value
RNA id TU150285
length 1487
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G119940
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27518264 ~ 27519750 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCAATCTAGCAATTTAAAACCCTTTTCTACAGCGGTTTAAAACATTAGCTCCGTAAGGCCTGaggaaaaagttaaaatgtaattcaatttacTAATTAAGGCCTCAGGCCTCAGTACAAACCAGCAGACACGGTGGACCTCAAAGACTAGTTTTAAAGAACGCTGACATTGACAATTTCATTAGTTGCTGTTCTTTTGTTGCAACATTGACAATAACATTAACTTTCAGATATTTTCCAAACAGATATGAATCACATCTAATTAGTTTTTATGTTGCTTGCTATCCAAAAGGATAAGTGGCAAAAGCCACTTTGTCCTGAAAcagataagaaacaaaaaacagttgtGCCAGAGGTTTTCATTCTTGGCTCCTTGTATTACTGGCTGGGATAAAGCAAGGAAGAATTTAAAGGAATCTTTCTTTTCAGACCAAATCTCTATTGATTGGCATGCATTAGAGTGTTAGTGGCTATAAGTGATTGTACACTGTATAATGTGAGAGAAATGGAACGTATGCAAATGTATCTTgaaaaatacatggaaaaaatgGCTTTGAATGCTAGCTACTCCAAATATACTCttaagtatttattcatttccaaAGCTTTTGAAACCAAACTGGTTCAATTGTTCCTTTTTAAGTACCAATGACATATTTCTTTGTCTGTGCAATCCCCCAAATCACTGCAGATTTCCCCAATTTTTGTAGTATTAATGTTTCAAAAATGACTGTTCCAAATTCCtactaaatgtgtttatatgacCAGTGGCCTTAATAATGTTGTATACAGTTAAAATTCCCAATGCCTGTTTCAGTtgcattgtaattattataaggCTGTTATAaggaacattattttattttttagaattttccTTTCCGTGTCCTTTTTGGAACTTTTTCAGGAGAACCATAGATTTTTCGAATGCGTTCATAATTTTTCTGAGTTTGTTAGTAAGGGGTTCTGCATTTTAAGGTATATTACTTTCTCTTTCACAAAATACCGAgtatacatagacacacacgcacacacgcacacacgcacacacacacatctatgaaatatatacatgtatcatctataaattaaatacatattcaaaatcACCTGTTTGTGGCaataaaaggaatacaaaaaagtgCAAGTTTGATAATGTATCTTTGTGCAGGATCACCCCTTAAAGTTCAGCAGTTTCATGGCTGTACGATTCAGAATACTATTGACTGTATCTTGATTTCTGCCAGACTTGTTGCCATATAAAACTGCTGTCAGATTCATCTGTCATCTTTGCTCGCTTTTTCTATTGTCTCTGTCACTGAGCACTATTCACTCCTGACCTGGGATGAATGTATGTACGGAACCTGTACATGGGTTAGCTTTTTTCTTGtcaatgttgtatttatttaataagggACTGTGATATTTAGTCAATAAATGGTTTGAAGAAGCactgaatgttttctttaattgtttttcattctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150286 lncRNA upstream 2718 27514319 ~ 27515546 (+) True G119941
TU150242 lncRNA upstream 236692 27281006 ~ 27281572 (+) True G119897
TU150172 lncRNA upstream 662822 26849626 ~ 26855442 (+) True G119836
TU150170 lncRNA upstream 668766 26844689 ~ 26849498 (+) True G119834
TU150155 lncRNA upstream 691672 26825215 ~ 26826592 (+) True G119820
TU150317 lncRNA downstream 150883 27670633 ~ 27670834 (+) True G119963
TU150408 lncRNA downstream 395092 27914842 ~ 27915123 (+) True G120029
TU150419 lncRNA downstream 429647 27949397 ~ 27951723 (+) True G120039
TU150464 lncRNA downstream 672174 28191924 ~ 28202170 (+) True G120078
TU150509 lncRNA downstream 783297 28303047 ~ 28304416 (+) True G120112
AMCG00018944 mRNA upstream 4333 27500360 ~ 27513931 (+) True AMCG00018944
AMCG00018943 mRNA upstream 36243 27475501 ~ 27482021 (+) True AMCG00018943
AMCG00018941 mRNA upstream 245001 27259930 ~ 27273263 (+) True AMCG00018941
AMCG00018942 mRNA upstream 315614 27201952 ~ 27202650 (+) True AMCG00018942
AMCG00018939 mRNA upstream 442831 27073796 ~ 27075433 (+) True AMCG00018939
AMCG00018945 mRNA downstream 48690 27568440 ~ 27580251 (+) True AMCG00018945
AMCG00018949 mRNA downstream 106087 27625837 ~ 27662982 (+) True AMCG00018949
AMCG00018950 mRNA downstream 221277 27741027 ~ 27742100 (+) True AMCG00018950
AMCG00018951 mRNA downstream 261877 27781627 ~ 27791861 (+) True AMCG00018951
AMCG00018957 mRNA downstream 705028 28224778 ~ 28235729 (+) True AMCG00018957
TU150090 other upstream 1057037 26460620 ~ 26461227 (+) True G119762
TU149874 other upstream 2032818 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 2250483 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 6329018 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 6762044 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile