RNA id: TU150317


Basic Information

Item Value
RNA id TU150317
length 202
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G119963
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27670633 ~ 27670834 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTATAAAACCGCATTTATATCTGTTTGCAGACAGATATAtcaagtcattttatttttttattttgctagaGTGAACAACTTAAAATCGCAAAACAAAGGTAACCAATCCGGTATCAACCACTCCCTGTAAACACATGCACAGTTAATATAGGAGTTTGACAATGAGGCCATCAGCGATGAGGTATGTACCTCACTTTTT

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150285 lncRNA upstream 150883 27518264 ~ 27519750 (+) True G119940
TU150286 lncRNA upstream 155087 27514319 ~ 27515546 (+) True G119941
TU150242 lncRNA upstream 389061 27281006 ~ 27281572 (+) True G119897
TU150172 lncRNA upstream 815191 26849626 ~ 26855442 (+) True G119836
TU150170 lncRNA upstream 821135 26844689 ~ 26849498 (+) True G119834
TU150408 lncRNA downstream 244008 27914842 ~ 27915123 (+) True G120029
TU150419 lncRNA downstream 278563 27949397 ~ 27951723 (+) True G120039
TU150464 lncRNA downstream 521090 28191924 ~ 28202170 (+) True G120078
TU150509 lncRNA downstream 632213 28303047 ~ 28304416 (+) True G120112
TU150559 lncRNA downstream 719070 28389904 ~ 28390171 (+) True G120155
AMCG00018949 mRNA upstream 7651 27625837 ~ 27662982 (+) True AMCG00018949
AMCG00018945 mRNA upstream 90382 27568440 ~ 27580251 (+) True AMCG00018945
AMCG00018944 mRNA upstream 156702 27500360 ~ 27513931 (+) True AMCG00018944
AMCG00018943 mRNA upstream 188612 27475501 ~ 27482021 (+) True AMCG00018943
AMCG00018941 mRNA upstream 397370 27259930 ~ 27273263 (+) True AMCG00018941
AMCG00018950 mRNA downstream 70193 27741027 ~ 27742100 (+) True AMCG00018950
AMCG00018951 mRNA downstream 110793 27781627 ~ 27791861 (+) True AMCG00018951
AMCG00018957 mRNA downstream 553944 28224778 ~ 28235729 (+) True AMCG00018957
AMCG00018963 mRNA downstream 594178 28265012 ~ 28299406 (+) True AMCG00018963
AMCG00018964 mRNA downstream 669669 28340503 ~ 28342812 (+) True AMCG00018964
TU150090 other upstream 1209406 26460620 ~ 26461227 (+) True G119762
TU149874 other upstream 2185187 25484297 ~ 25485446 (+) False AMCG00018913
TU149795 other upstream 2402852 25234082 ~ 25267781 (+) True G119507
TU148883 other upstream 6481387 21187956 ~ 21189246 (+) True G118815
TU148789 other upstream 6914413 20755629 ~ 20756220 (+) False AMCG00018802

Expression Profile