RNA id: TU150338


Basic Information

Item Value
RNA id TU150338
length 721
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G119981
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27673846 ~ 27674566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACTAAAACAACTAACACAAAGGAGGATCAGGCAAGTGACATTTTTATTGCacagaacatttattaaaaggtagcaaaatatgtttttgaaacaaagataaaataattgtcactttaaagttaaaaaagaaaattataaaaatggcCTGTGTTGTGTCAATGTAAACTGTgccttttgttaaataaaacaaacccacaaaatTATACAGTAATATCAAAATGAATGGTCGCGACCATCACCAGGATaggcggttttgaaaatggatgaatggatggatggatggatcaaAATGAATGGCTTCAGTTTGTTGATTGTCCCAGCTGACTGCTTACTGCATGAGATATAGACAAGAGtgcgagagagagtgagagagggagagaatgagaaaTGAAACAATTGGAGGGGgcagagaaacatttcaaacacgAAGGGACACTTATACTAACCTTAATGAAGTGCCACTCAAAATCCATCAGGTTTTTTAATAGAGTGGCAACATGCTGATTTACTGTCTGCGTCTTCTTTTGGACCATCTTGCCTGTCTTTTTAGATATTATCTTTCCACAGCCAGCCTTTGTTCCCCTCTCTGGGTTAATCTCAATGAAGcgactaaaacaaacaagcacaagatCAGGGAATGCAAGAACTCACAGAACGTAACAAGAAATTACTGATTGTAAAAGCAGTATCACATGAATGTCATTTTAGTTCAAAACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150307 lncRNA downstream 101017 27571254 ~ 27572829 (-) True G119956
TU150290 lncRNA downstream 154131 27518612 ~ 27519715 (-) True G119945
TU150289 lncRNA downstream 166647 27506508 ~ 27507199 (-) True G119944
TU150274 lncRNA downstream 205197 27465387 ~ 27468649 (-) True G119929
TU150257 lncRNA downstream 317814 27355825 ~ 27356032 (-) True G119912
TU150343 lncRNA upstream 58497 27733063 ~ 27733373 (-) True G119986
TU150345 lncRNA upstream 66366 27740932 ~ 27743035 (-) True G119988
TU150352 lncRNA upstream 94989 27769555 ~ 27769799 (-) True G119995
TU150405 lncRNA upstream 224756 27899322 ~ 27899556 (-) True G120026
TU150410 lncRNA upstream 257101 27931667 ~ 27933173 (-) True G120031
AMCG00018946 mRNA downstream 106436 27553426 ~ 27567410 (-) True AMCG00018946
AMCG00018948 mRNA downstream 277620 27382003 ~ 27396226 (-) True AMCG00018948
AMCG00018947 mRNA downstream 302476 27299590 ~ 27371370 (-) True AMCG00018947
AMCG00018940 mRNA downstream 448900 27217162 ~ 27224946 (-) True AMCG00018940
AMCG00018937 mRNA downstream 609865 26943064 ~ 27063981 (-) True AMCG00018937
AMCG00018953 mRNA upstream 133576 27808142 ~ 27841558 (-) True AMCG00018953
AMCG00018952 mRNA upstream 188219 27862785 ~ 27878157 (-) True AMCG00018952
AMCG00018955 mRNA upstream 275146 27949712 ~ 27963857 (-) True AMCG00018955
AMCG00018954 mRNA upstream 300426 27974992 ~ 27984938 (-) True AMCG00018954
AMCG00018956 mRNA upstream 323589 27998155 ~ 28007014 (-) True AMCG00018956
TU150237 other downstream 431272 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 859773 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 2486438 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 2502202 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 2596266 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile