RNA id: TU150410


Basic Information

Item Value
RNA id TU150410
length 805
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G120031
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27931667 ~ 27933173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCACATTGATTCCTCAAATGTTGCTTATGCAGGGTAAACCACATGAGTGTCCATTGCCTGACACTGATATTTTGCctaatccttttgtttttgagcCACATTCACAGGTTCCGAATGTGTATTTGATGGATCAGCATACATTTGTAAGAATTCTGGTAGATTGCTAGCAGGTTTTGCAGTATTGTTCCCTGAGTACACTGTTAAATTTTCTTGTCCAGGACAATCGTCACAATATTCTGAATTGGCAGCTTTGCTAGAAGCCCTTAGGATAACTGATGATTCTGCAGATATTTATACAGATAGTGCTTATGTCGTTACTGCATGTACCTTGCTACCTCTCTATGCCAAAAACTATTTCCGATCATCAGATGATAGTCCCTTGAAACATGCTACCTTACTACAGCATATTTGGTCTTCTATTCAGACGAGACCAGGCGaaattgctgttttgaaagttaAGGTCCATGTGAGAAATGATCTTAGAGGTGAACATCATATCAGAAATGATGAAGCTGATCGGTGTGCTAAATTTGCTGCTAGACACTGTGGTCCGTGGCATTTGTGTCAAGCATTAGGCATTACCCAGAAATTACATATTCCATTCTACCCTCAATCGTCAGGAGTAGTCGAGCGTGGAAACCGCACtctaaaaacacttttgaaaaaaatgtgtcaagACAATCCAAAAAGGTGGGCTGAGGAATtacctctgtgcctaatggcaATGCGGTCAACACCACACTCCACTACCAGAATTACACCACATCAAGCGATGACTGGACATCTTATGCATGTCCCAGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150405 lncRNA downstream 32111 27899322 ~ 27899556 (-) True G120026
TU150352 lncRNA downstream 161868 27769555 ~ 27769799 (-) True G119995
TU150345 lncRNA downstream 188632 27740932 ~ 27743035 (-) True G119988
TU150343 lncRNA downstream 198294 27733063 ~ 27733373 (-) True G119986
TU150338 lncRNA downstream 257101 27673846 ~ 27674566 (-) True G119981
TU150549 lncRNA upstream 420927 28354100 ~ 28354838 (-) True G120145
TU150564 lncRNA upstream 471840 28405013 ~ 28405304 (-) True G120160
AMCG00018952 mRNA downstream 53510 27862785 ~ 27878157 (-) True AMCG00018952
AMCG00018953 mRNA downstream 90109 27808142 ~ 27841558 (-) True AMCG00018953
AMCG00018946 mRNA downstream 364257 27553426 ~ 27567410 (-) True AMCG00018946
AMCG00018948 mRNA downstream 535441 27382003 ~ 27396226 (-) True AMCG00018948
AMCG00018947 mRNA downstream 560297 27299590 ~ 27371370 (-) True AMCG00018947
AMCG00018955 mRNA upstream 16539 27949712 ~ 27963857 (-) True AMCG00018955
AMCG00018954 mRNA upstream 41819 27974992 ~ 27984938 (-) True AMCG00018954
AMCG00018956 mRNA upstream 64982 27998155 ~ 28007014 (-) True AMCG00018956
AMCG00018961 mRNA upstream 206383 28139556 ~ 28154700 (-) True AMCG00018961
AMCG00018959 mRNA upstream 243646 28176819 ~ 28189538 (-) True AMCG00018959
TU150237 other downstream 689093 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 1117594 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 2744259 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 2760023 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 2854087 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile