RNA id: TU150549


Basic Information

Item Value
RNA id TU150549
length 405
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G120145
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 28354100 ~ 28354838 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCGACTGGAAGCCCCCagacttcttcttcttcttgttctgGGCCCGGACGAGCTCTCTGGTGTCCGGCTCCGCGTCCGAAAGACAGTCCGACGCTGCAGGGAAACGGGGTAACATTTTCCCAGACTTTTTTTGAGTTGGTGTCATCGTCGCTAACTTCGGCTGCGACTTCGAACTCCCCACCGTCCGAGTCTAAATCGGGCTCACGGTTCCCGGAGTGTCGCTTCTTTTTGGTCAGTTTCTTCTTCCTCTGCGCCATTTCCGTAACTTCGGCCTCGATGAAACCAATTCTCTCGGTTCCGATGCAGATAGTGTGAATCGAAACACGTCGAGGTTCTCTGTATTAACAATCACAAATACTCGTGGATCAGGAACACTCCGTGTGGACTCGTACAGGAGGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150410 lncRNA downstream 420927 27931667 ~ 27933173 (-) True G120031
TU150405 lncRNA downstream 454544 27899322 ~ 27899556 (-) True G120026
TU150352 lncRNA downstream 584301 27769555 ~ 27769799 (-) True G119995
TU150345 lncRNA downstream 611065 27740932 ~ 27743035 (-) True G119988
TU150343 lncRNA downstream 620727 27733063 ~ 27733373 (-) True G119986
TU150564 lncRNA upstream 50175 28405013 ~ 28405304 (-) True G120160
AMCG00018968 mRNA downstream 3077 28350625 ~ 28351023 (-) True AMCG00018968
AMCG00018969 mRNA downstream 3572 28341766 ~ 28350528 (-) True AMCG00018969
AMCG00018966 mRNA downstream 14743 28303047 ~ 28339357 (-) True AMCG00018966
AMCG00018958 mRNA downstream 90333 28245468 ~ 28263767 (-) True AMCG00018958
AMCG00018960 mRNA downstream 132049 28203706 ~ 28222051 (-) True AMCG00018960
AMCG00018967 mRNA upstream 15524 28370362 ~ 28376458 (-) True AMCG00018967
TU150237 other downstream 1111526 27230873 ~ 27242574 (-) True G119893
TU150163 other downstream 1540027 26813480 ~ 26814073 (-) True G119827
TU149840 other downstream 3166692 25186207 ~ 25187408 (-) True G119545
TU149831 other downstream 3182456 25134771 ~ 25171644 (-) True G119538
TU149755 other downstream 3276520 25075398 ~ 25077580 (-) False AMCG00018898

Expression Profile