RNA id: AMCG00018977


Basic Information

Item Value
RNA id AMCG00018977
length 6177
RNA type mRNA
GC content 0.68
exon number 41
gene id AMCG00018977
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 200810 ~ 232866 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTGCGGGGATGTGCGTGGCCACGGGTGACCCTCACTACGTGTCGTTCGACGGGCGCGCCTTCTCCTTCCTGGGTGACTGTGAGTACGTTCTGGTGCAGGACAGCGAGGGGCGCTTCAGCCTGACGGCTCAGAACCTGCCCTGCGGCAGCTCAGGGGTCACCTGCACCAAGGACGTCACCCTCACCCTGGGCAACACCATCATACACCTGCTGagagGCCAGGCCGTGACGGTGAACGGCGCGCCCGTGTCTCTGCCCCGGCTGTACACCGGCAGTGGGCTGCGTCTGGAGCGGGCCGGGCTGTTCCTGTCCCTGAGCTCCACCCTGGGCCTCACAGTGCTGTGGGACGGAGcgatgcgtgtgtatgtgcgtCTGTCCCCAGAGCTCCGTGGCCGAGTCACCGGCCTGTGTGGGAATTTTGATGGCGACGCCGAGAACGACTTCACCTCCCGGCAGGGCATCGCCGAGTCCACCGCCGAGCTCTTCGCCAACTCCTGGAGGGTCAGCCCTAGCTGCCCGGAGGTCACAGGTCACGACCTCCGCGACCCCTGTGTGgtccATCCTCACCGTGCCCCGTGGGCGAGGAAGCGCTGTGCTGTGATCACACAGGAGCTGTTTGCCCCCTGTGACTCTGGAGGCGACTGTGAGTGTCTCTGCACCGCCATTGCTGCCTACGCAGAGGAATGCAACCAGCGCGGCATCTACATCCGCTGGAGGTCCCAGGAGCTCTGCCccCTGCAGTGTGAGAACGGTCTGGAGTACGAGGCCTGTGGCCCCGCCTGCACCCCGACCTGCGCCAGCCTAAGCGAGGCTCCCGACCCACACTGCAGCGCCCTGTCCTGTCTGGAGGGCTGCTTCTGCCCCCCCGGCACCGTCTTGCATGGTGACGGCTGCATCGCTCCCTCTGAGTGCCCCTGCCAGTGGGATGGCTCAGTCTTCCCCCCTGGCGCCGCCGTCACCCAGGACTGCCGCAACTGctCGTGCAGGGAGGGGGTTTGGGAGTGTGAAGGCTCTCCCTGTGTCCCGGCGCTGCTCTGCCAGGAGTTGGAGTTCCTGTGTGGCTCGGGCCGCTGCATCCCGGCCGCCTGGCTGTGCGATCACCAGGATGACTGCGGCGACGGCTCAGATGAGGCCTGCGCTTTCGACTGCGCCGTGGGGGAGTTCCGCTGCTCTGGAGGGCGCTGCCTGCCAGGAGCGCTGCACTGCGATGGCCACCCGGACTGTCCCGACCAGTCTGACGAGCAGGGCTGTCTCCCCGAACCACCCCCGCTGTGCCCCCCAGGGGAGTTTTCCTGCGCCAGCGGCCGCTGCCTGCCCATGGGCCTGGTGTGCGACGGACAGCCTGACTGTGGCTTCTCTGATGATTCTGACGAAgaggGCTGCAGGGAGCAGTGTGGGCCGGGGCAGTTCCAGTGTGCGGAGGGCAGCTGCGTGCCGTATGCCCAGCGCTGCGACGGACGGGCCGACTGCGCAGACCACGGTGACGAGCGCGGGTGCGTGTGCGCGCCTGGGGAGCTGCAGTGTCCAGGGGGGCAGTGTATCGGCCCCCACAGGGTGTGTGACGGACACCGAGACTGTGCGTCCGGCATCGACGAGGCCCTGTGCTCCCCCACAGTGACCTGTGGCCCCGGGCAGCTGGCCTGTGCGGAGGGCACCTGTGTGGCAGCAGCGCGGCTGTGCGACGGAGTGCCAGACTGCCGGGGGGGGGAGGACGAGAGCGAGGCGGACTGCGAGGACGGCAGCGACGAGCGCATGTGCGAGGGCGCCTGTGGGCCAGGTCAACACGCCTGCCTCAGCGGGGAGTGTGTGACGCACCAGCAGCTGTGCGATGGCACCCCCCACTGCAGAGACGCCTCAGATGAGAGCCCCGACACCTGCGGTGAGAACACCTCCACCAGCCGGTGTCCAGAGTACAGCTGCCTGGATGGCTCTTGCCTACCCTTCAGAAAGGTGTGTGACGGTGTTGCGGACTGTCCTGACGGCAGGCTGGGGCCGGGTGGGGTCCCCTCTGACGAGCAGGGCTGTGGCATCTGGGGCCCCTGGGGGCTGTGGAGTGAGTGCAGTCAAACCTGTGGCCCCGGGAACCAGAGCCGGCACAGACACTGCCCCCTGATGGAGCCACTCAGACACTGCCGTGGGGAGGACACCCAGAGACAGCAGTGCTTCCATACTGCCTGCCCAGTGGACGGGCAGTGGTTGCCCTGGGTGGCGTGGTCGAACTGCTCGGGGGGGTGTGGGGGCGTGGTGCTGCGGCAGAGGGGCTGTGTCCCTCCACAGAACGGTGGCCGACCCTGCGCTGAGCTCCCTGGACCCGTGCCCGTCGCAACAGAGATCAGTACTCAGCTGACACTGAGGTCCTGTGCCCCCTGCCCTCTGACCTGCGCTGACCTGGCCAATGAGGCGACCTGCGACCCCCAGGCCAGCTGCTTCTCTGGGTGCTGGTGTCCCGAGGGCCAGGTGATGGATGCGGCCCAGCGCTGCGTGCGGCCGGAGGAGTGTCCCTGTGAGGTTGGGGGGGTGCGGTACTGGCCCGGCCAGCCGGTGAAGACAGGCTGCCAGATCTGCACCTGCATGGGGGGGCGGCCCCAGCACTGCCGCAGCAACCCGGAGTGCTCAGTGCACTGCGGCTGGTCTTCCTGGTCTCCCTGGGGGGACTGTCTGGGCACCTGTGGGGTGCAGAGTGTTCAGTGGTCCTTCCGCAGTCCGAACAACCCCAGCAAGCACGGCCAAGGGCGGCACTGCCGGGGCATCTACCGCAAAGCCCGCCGGTGTCAATGGGACAGCCTCCACGACGATGACCCCAGCGTCCCTCGCACTCCGCACCGCGACCCCTGGCCCCCCAGAGAGCACAGGCCCTCCGGTCACCACCTACCCTCTCCCCCCTGGAGCGCGTCATCCCAGCTGCCAGGCCACCCCCCCCAGGCTGGCCGACTGCACGCCCACAACCCCCAGCGCGACCTGCAGGGCTGGAGCCCCGAGCCCGAGCACTACCACGCCCTGACCTCCTGGACCCCCGATGCCCCCGGCCCAGTCGACCCCGggTCTCGCTGGTTGTCCACTCCCATGCCCCCCGTGCCCTCTGTGTCTGCGGGGGGTTGTGTGGGGGGGCAGTTCCGCTGTGGGAACGGCCGGTGTGTGCagggggggccggggggggccTTCTCCTGCCCCACCCCAGGCAGCTGCATCTCCTCCTGGCTGCGCTGCGACGGCCGGCCGGACTGTCCTGACGGCACGGACGAGAAGGGGTGCGCCCCCCCACTGGACAGGAGCACGCCAAGGGCAGGACAGCGCGGGCCAGACGGGGGCACTAGCGAGGCAACAATCACCGTGTCTCCACAGCCTCCAGGCTCAGGGACCCCTGCCATGGCTGCTGTCACCCTCCCCCAGCCAGGGGGGTCCCCAGGGATGCCCACAATGCCGacGCCCCCGGGCGGAGGCTCTGAGCCCATAGCTGCGTGTGATGGCCCCCTGGGGCTGGAGGATGGTCGCATCCGGTACGGCCAGCTGAGCGCCTCCTCTGACCGCGAGAACAACCCCGCCGACGCCGGGCGCCTCAACATTGTCCCCAAtgtTTTGAACATGGAGCCGGGCTGGAGTCCCCGTCAGGACGACCTGCAGCCCTTCTTCCAAGTGGACTTCCTGCGGCCCACCTTCGTGTCCGGGGTGGAGTTCAGTGCGCGGGGGGACAGCAGTGTGCCGGAGCGACGCTCTCTGGGCCACAGGGTGTTGGCGCGGTTCCTCAGGATCCTGCCGGTGGCATTCACTCACACCTTCTATCTGCGCTCTGAGATACTGGGCTGTGTTGAGGgcacTGTGCAGCCTGTGTCTCTTACCACGGCCCCCCGGGAGAGCAACGACGCCAAGTCAGAGGGGGACGGAGTGACACTGCTGTCCCCCCCGCCCTCTCAGAGAGtTTCGCAGTCCTCTGCTGTGCCGGGGGTTCGAGAGCACACCGGCCCCACGGGGACCCCGGGGGTCCTAGGCTCCGTCACAGCGTCCTCTTCCAGGGGCCCCCTGCCCCTCGACCCCTCCTCGGCCTCTCACACCGGGGGGCCGGGGCTACACACTGGGGGGCCCCAAGATGGCCGCCCAGGCCTGGCCACGCCCCCACCCTCCACCACCGGGGCTCCAGGGCTGGGCCCCCAAAGGCCAGGAGCCTCAGGGGAACCGGGGATTCAGCCACTGCCGTTGGGCCCTACGCCCACCCctaccaccacccccacccctaaACAAGACATGTACAGCGAGTCAGGCACCACCGCCACCGCCAGCCCCGGCCTGCGCCCCCTGCCCCTCCTGCACACCACCACACAGCCGGCCCCCGTCTCCAGTGTGTGGACACCTACCCCTCCGGAGGGGGCCCCCGGATCACGGACACTGTGTGTGCAGTTCCAGTTTGCGTGTGTGGTATCGGGCTGCGTGGATGCCATGTTTGTGTGCGATGGACAGATGGACTGCCCCGATGGCTCCGATGAGATGCAGTGTGtGGACTGTGTCCTTTCCCCTTGGACGCAGTGGAGTCAGTGCAGCGTGTCCTGTGGCCTGGGCTCTGTGTTCCGGCAGCGGGACGTCCTAAGGGAGGCCGGGCCGGGGGGGGAGTGCGGCAGGGCTGGGTTCGACAGCCGCGCCTGCTTCATACAGGCCTGTCCCAtggaCGGTCAGTGGTCCAAGTGGTCAGCCTGGTCTGAGTGCGACGTGCGCTGCGGCGGGggggagagactgaggaacaGGAGCTGCTCCAACCCCCCACCCAAGAACCGGGGCCGGGATTGCCAGGGGGGGGGGACCCAGACAGAGAGCTGCAACACCCAGCCCTGCAGCCCCGTCCCCGGCACCGGCACGGGCTGTGGCGAGGGCATGGTGCTGGTTGGGGAGCCGGAGTGCCAGGCTGGTGCGGTGGAGCCCTGCCCCCTCACCTGCTCCCACCTGAGTGGCCAGACGAACTGCAGCGTCCCCTGCCTGACTGgCTGCCGTTGCCCTCCCGGCCTGTACCTACAGGGGCGCCGCTGTGTGAATTCCAGCCAGTGTTACTGCCTGTGGGATGGCCAGCTACTGCCACCAGGGCAGGAGGTCAGCACGAGGAACTGCACTCTATGtacgTGTCAGGAAGGGCGGGTCTCTTGCAACGACTCACTGTGCCCAGTCAACTGTGACTGGTCAGCCTGGTCATCGTGGACCCCGTGTGACAGCAGCTGCGGGGTGGGGCTGGAGCAGCGGTACAGGTCACCCCTGATCCAGCCCAGCGAGGAGGGTGGCCCCTTCTGCCCCGGGGACTCCGCTGAGGTTCGCAAGTGTCACACACCCTGCCCCACAGtGCCGGGTGGCTGGTCCCCCTGGTCCCCCTGGTCTCCATGCTCCTCAGACTGTGACTCAGGGGTTCAGACACGACGGCGCTCCTGCAGCGCCCCCCTGCCGCAGCACGGGGGCTCGCACTGCCCGGGGCCACACATGCAGACCGGGGACTGCaacacacagccctgcacagATGGCAGCAGCTGTCCGGCGGCACAGCAGCATGTCCAGTGTGCCGGGCGCTGCCCCCGCCACTGCGCTGACCTGCAGCAGGGCATCCAGTGTGAGGACAGCGCCCCCTGCCAGCCAGGCTGCCGCTGCCCAGAGGGTCTGCTGGAGCAGGAGGGGGTGTGTGTGGAGCCCTGGCAGTGTGACTGCACTGATGCGCAGGGGCAGAGCTGGGCGCCAGGCAGCTGGCATCAGGACGCCTGCAACAACTGCAGCTGCGCAGACGGACGCCTGTCGCTGACCTCGGAATTTGATGATGCGGACTGCCAATCGGAGGAGGCCCAGAACAAACCATGTGACCTGGCACCCTGCCCCCCACTCTGTGTCCGTGACGAGCAGGAGCTGCGGCTGGGAGACACGTGGCTGCAGGGGGAGTGCGCGCAGTGTACCTGCACGCCCGAGGGAGACTACTGCCAGCACATCGACTGTCGAGatgacCTGTGCCCATGGTCTGCTTGGTCAAGTTGCTCGCGGAGTTGCGGCGCGGGGGTGTCAACTCGCCGgcgcagctgtgtgtgtgaggaggcGGGGGGTCCCGGGGACTTGGCCTGCCCCCCCGGTACCGACGGAGCGAGGGAGCAGGAGGAGACACAGCTCTGCTACAGTCAGCCCTGCCCAGGTCACTGGACATACCCGGGCACtgcacactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38203 lncRNA downstream 22460 255326 ~ 255697 (+) True G30554
TU38232 lncRNA downstream 137580 370446 ~ 371798 (+) True G30583
TU38301 lncRNA downstream 210302 443168 ~ 496520 (+) False G30619
TU38304 lncRNA downstream 259694 492560 ~ 496520 (+) True G30619
TU38302 lncRNA downstream 261454 494320 ~ 496520 (+) False G30619
AMCG00018978 mRNA upstream 402 196318 ~ 200408 (+) True AMCG00018978
AMCG00018982 mRNA upstream 11094 185846 ~ 189716 (+) True AMCG00018982
AMCG00018979 mRNA downstream 523 233389 ~ 234148 (+) True AMCG00018979
AMCG00018980 mRNA downstream 1321 234187 ~ 237244 (+) True AMCG00018980
AMCG00018981 mRNA downstream 4384 237250 ~ 245772 (+) True AMCG00018981
AMCG00018983 mRNA downstream 13232 246098 ~ 255447 (+) True AMCG00018983
AMCG00018984 mRNA downstream 22607 255473 ~ 259291 (+) True AMCG00018984
TU38173 other upstream 126579 73792 ~ 74231 (+) True G30527
TU38241 other downstream 162635 395501 ~ 398672 (+) True G30589
TU38342 other downstream 321900 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 762461 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 1000628 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 1020500 1253366 ~ 1253735 (+) True G30877

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000140_00799875_00859860.mRNA False 14751 mRNA 0.57 84 CI01000140 798948 ~ 859860 (+)