RNA id: AMCG00018980


Basic Information

Item Value
RNA id AMCG00018980
length 705
RNA type mRNA
GC content 0.67
exon number 5
gene id AMCG00018980
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 234187 ~ 237244 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AtgattgtcatcatcatcatcatcatcatcatgactGAAACACAGTCAGAGACAGTGTGTATGTCCGTCAGTGAGTGGTCAGAGTGGACTCCCTGCTCCCCCTGCCAGCCCCTGACCTCCCTGCCAGCCGGCTCTCCTCCCCCAGCCGCAGGTCAGCTGGTGTCCCTGCAGCGCCGGTACCGGGCCTGTGTGGACCTGGACTCAGGATCGCCGGTGCTGGAAGGGGCAGGGCAGCTGTGTggggaggagctggaggaggagcgaCTGTGCCCAGATGCCCTTGCCTGTCAGGACGTGTGCCAGTGGAGCCCCTGGGGCGCCTGCAGGGAGCCGTGCAGCGGGGGCTTCCGCCAGCGCCTCCGCCACCCACAGGGCCCGGTGCCCATGCAGCACTGCCCTCGCCCCCATGCCCAGACTCAGAGCTGCAACACTGTCCTGTGCCCAGGTGAGCGCTGTGAGGACAGGGGGAAGGTGTTCGGGGCGTCCTGTGCCAATCGCTGCCCCCGGAGCTGTGCTGACCTCTGGGAGCACGTGCAGTGTCTGCAGGGATCCTGCCACCCTGGCTGCCGCTGTGCGGAGGGCTGGCTGCTGCAGGACAGCTTCTGTGTGCCGGTGTCGGAGTGCCGCTGCGGCCTCCCTGTGGACAACAGCACCCTGGAGCTGCTGCCGGGGCAGAGCGTGGCTCTGGACTGCAACAGCTGGTGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38203 lncRNA downstream 18082 255326 ~ 255697 (+) True G30554
TU38232 lncRNA downstream 133202 370446 ~ 371798 (+) True G30583
TU38301 lncRNA downstream 205924 443168 ~ 496520 (+) False G30619
TU38304 lncRNA downstream 255316 492560 ~ 496520 (+) True G30619
TU38302 lncRNA downstream 257076 494320 ~ 496520 (+) False G30619
AMCG00018979 mRNA upstream 39 233389 ~ 234148 (+) True AMCG00018979
AMCG00018977 mRNA upstream 1321 200810 ~ 232866 (+) True AMCG00018977
AMCG00018978 mRNA upstream 33779 196318 ~ 200408 (+) True AMCG00018978
AMCG00018982 mRNA upstream 44471 185846 ~ 189716 (+) True AMCG00018982
AMCG00018981 mRNA downstream 6 237250 ~ 245772 (+) True AMCG00018981
AMCG00018983 mRNA downstream 8854 246098 ~ 255447 (+) True AMCG00018983
AMCG00018984 mRNA downstream 18229 255473 ~ 259291 (+) True AMCG00018984
AMCG00018990 mRNA downstream 174239 411483 ~ 414872 (+) True AMCG00018990
AMCG00018989 mRNA downstream 222915 460159 ~ 473258 (+) True AMCG00018989
TU38173 other upstream 159956 73792 ~ 74231 (+) True G30527
TU38241 other downstream 158257 395501 ~ 398672 (+) True G30589
TU38342 other downstream 317522 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 758083 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 996250 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 1016122 1253366 ~ 1253735 (+) True G30877

Expression Profile