RNA id: AMCG00018983


Basic Information

Item Value
RNA id AMCG00018983
length 1311
RNA type mRNA
GC content 0.67
exon number 10
gene id AMCG00018983
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 246098 ~ 255447 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgctgtgctgtgattggcCATTCAATGTGAgtgatgctcctgtgctgtgctgtgattggcCGGTCAGTATGAGTGAGTGCTGCTGTGTTGCCAGACGGGGGGCCGTGCTGGGCGGAGGCGTGTGCCAATCGGAGCTGCGCGTGGACGGATTGGGGTTCCTGGGGGGGCTGCTCTCGTTCCTGCGGCGccgggcagcagcagcggctcAGGACGTACCTCGCACCCGGGTGCCGGTGTGTGTGGACATCCCTGGATCTGTGTTCAGCAGCTGTGGTCCCTCCTGCCCGCGCTCCTGTGATGACCTCACGCTATGTGAGTGGCGCTGTGAGCCAGGCTGCTACTGTGCAGGGGGGAAGGTGCTGAGTGCAAATGGGACGTCCTGTGTGGAGAGGGAGGACTGCTCCTGCCTGGACCTACACAGCGGACACAGACTGGGCCCCGCAGAGAGCATCCCAGCCCCTGATGGCTGCAACAactgCTGCGCCTGTCCGGAGCAGCAGGGGGGTGGTGCAGCGTGCCCGGGGGAGCAGGAGACCCACGCAGGGCTGGGCACCCAGATCCAGAGGCAGCCCTGCCCCACCATCAGCTTCTGCCCCATGCATGGCTCGTGGGGTCCCTGGGGCCCGTGGTCTAAGTGTGACCACTGTGGGGGGGAAGAGGTGCGAGTGCGGGAGTGTAACAGCCCTCCTGCGCGGTTTGGGGGGCTGCCCTGCCCCAGGTCCTCCTGCGGCTGTGAGggggggctgctgctgcaggaCGGGCGCTGTGTGGAGCCCATGGACTGTCGCTGCCTGCTGCACAACCGCACTGCAGTATCGGAGAGGGACAATGTGTCGAGGGTGTGGCAAGGCCGCTCAGCATGGCAGGAGCTGGAGCCAGGAGAGACTGTCAACCTCCCCTGCAAGAACTGTACCTGTGAGGGGGGGCGCCTGCAGTGTCAGTCAGCTCCTGGCTGCCGGGTGGACGGTGACTGGAGCCCATGGGGGGCGTGGTCACAGTGTTCAGTGCCATGTGTTCCCTCCCCAGTGGCACTCAGCCCCGGTGCTGTGGCTCACTGCAGCAGCCTGGAGCAGAGGAGGCCGAGCAGCTGCTTGATCTCGCCCAGCTCGCTGGAGGGTCGATTGTGCCAGGGCTGCAGCGTAGCTGAGCTGCTGCTGTGGGGCGTGGGGCCTGGTGGGAGGGTGCCTGGCGGCCTGCAGTCTCAGTACCGGTTCTGCTCCAGCCCAGCCCCGGCGGGGGCGGGGCTGCCCTGCTTGGGACTGGACCGCCAGGACCAGCTGTGCCTGCTGCGATCCTGCCAGCGTGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38232 lncRNA downstream 114999 370446 ~ 371798 (+) True G30583
TU38301 lncRNA downstream 187721 443168 ~ 496520 (+) False G30619
TU38304 lncRNA downstream 237113 492560 ~ 496520 (+) True G30619
TU38302 lncRNA downstream 238873 494320 ~ 496520 (+) False G30619
TU38383 lncRNA downstream 483779 739226 ~ 741433 (+) False AMCG00019012
AMCG00018981 mRNA upstream 326 237250 ~ 245772 (+) True AMCG00018981
AMCG00018980 mRNA upstream 8854 234187 ~ 237244 (+) True AMCG00018980
AMCG00018979 mRNA upstream 11950 233389 ~ 234148 (+) True AMCG00018979
AMCG00018977 mRNA upstream 13232 200810 ~ 232866 (+) True AMCG00018977
AMCG00018978 mRNA upstream 45690 196318 ~ 200408 (+) True AMCG00018978
AMCG00018984 mRNA downstream 26 255473 ~ 259291 (+) True AMCG00018984
AMCG00018990 mRNA downstream 156036 411483 ~ 414872 (+) True AMCG00018990
AMCG00018989 mRNA downstream 204712 460159 ~ 473258 (+) True AMCG00018989
AMCG00018998 mRNA downstream 243202 498649 ~ 503431 (+) True AMCG00018998
AMCG00019000 mRNA downstream 251188 506635 ~ 514431 (+) True AMCG00019000
TU38173 other upstream 171867 73792 ~ 74231 (+) True G30527
TU38241 other downstream 140054 395501 ~ 398672 (+) True G30589
TU38342 other downstream 299319 554766 ~ 556904 (+) False AMCG00018999
TU38402 other downstream 739880 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 978047 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 997919 1253366 ~ 1253735 (+) True G30877

Expression Profile